Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VXJ entry

There are 2 chains in PDB entry 6VXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35TYR 654
B
 ALA 35TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6VXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 94Right-handed alpha
Helix 2
AA2
A
116 121Right-handed alpha
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
153 168Right-handed alpha
Helix 5
AA5
A
187 189Right-handed 310
Helix 6
AA6
A
190 199Right-handed alpha
Helix 7
AA7
A
220 232Right-handed alpha
Helix 8
AA8
A
233 235Right-handed 310
Helix 9
AA9
A
273 278Right-handed alpha
Helix 10
AB1
A
289 294Right-handed alpha
Helix 11
AB2
A
330 336Right-handed alpha
Helix 12
AB3
A
341 352Right-handed alpha
Helix 13
AB4
A
372 389Right-handed alpha
Helix 14
AB5
A
394 413Right-handed alpha
Helix 15
AB6
A
422 440Right-handed alpha
Helix 16
AB7
A
441 445Right-handed 310
Helix 17
AB8
A
452 461Right-handed alpha
Helix 18
AB9
A
465 478Right-handed alpha
Helix 19
AC1
A
486 498Right-handed alpha
Helix 20
AC2
A
503 527Right-handed alpha
Helix 21
AC3
A
534 551Right-handed alpha
Helix 22
AC4
A
557 561Right-handed 310
Helix 23
AC5
A
565 570Right-handed 310
Helix 24
AC6
A
572 584Right-handed alpha
Helix 25
AC7
A
609 617Right-handed alpha
Helix 26
AC8
A
622 650Right-handed alpha
Helix 27
AC9
B
85 94Right-handed alpha
Helix 28
AD1
B
116 121Right-handed alpha
Helix 29
AD2
B
135 148Right-handed alpha
Helix 30
AD3
B
153 168Right-handed alpha
Helix 31
AD4
B
187 189Right-handed 310
Helix 32
AD5
B
190 199Right-handed alpha
Helix 33
AD6
B
220 232Right-handed alpha
Helix 34
AD7
B
233 235Right-handed 310
Helix 35
AD8
B
273 278Right-handed alpha
Helix 36
AD9
B
289 294Right-handed alpha
Helix 37
AE1
B
330 336Right-handed alpha
Helix 38
AE2
B
341 352Right-handed alpha
Helix 39
AE3
B
372 389Right-handed alpha
Helix 40
AE4
B
394 413Right-handed alpha
Helix 41
AE5
B
422 440Right-handed alpha
Helix 42
AE6
B
441 445Right-handed 310
Helix 43
AE7
B
452 461Right-handed alpha
Helix 44
AE8
B
465 478Right-handed alpha
Helix 45
AE9
B
486 498Right-handed alpha
Helix 46
AF1
B
503 527Right-handed alpha
Helix 47
AF2
B
534 551Right-handed alpha
Helix 48
AF3
B
557 561Right-handed 310
Helix 49
AF4
B
565 570Right-handed 310
Helix 50
AF5
B
572 584Right-handed alpha
Helix 51
AF6
B
609 617Right-handed alpha
Helix 52
AF7
B
622 650Right-handed alpha
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There are 4 sheets in PDB entry 6VXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
105 108anti-parallel
Strand 4
A
111 112anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
206 209parallel
Strand 3
A
237 240parallel
Strand 4
A
75 79parallel
Strand 5
A
255 260parallel
Strand 6
A
263 268anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
105 108anti-parallel
Strand 4
B
111 112anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
206 209parallel
Strand 3
B
237 240parallel
Strand 4
B
75 79parallel
Strand 5
B
255 260parallel
Strand 6
B
263 268anti-parallel
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