Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VXK entry

There are 4 chains in PDB entry 6VXK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 12	PRO 391
B	GLU 37	TYR 935
C	GLU 12	PRO 391
D	GLU 37	TYR 935

There are 18 helices in PDB entry 6VXK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	201	205	Right-handed 310
Helix 2	AA2	A	259	269	Right-handed alpha
Helix 3	AA3	A	294	304	Right-handed alpha
Helix 4	AA4	B	128	133	Right-handed alpha
Helix 5	AA5	B	333	340	Right-handed alpha
Helix 6	AA6	B	460	466	Right-handed alpha
Helix 7	AA7	B	492	494	Right-handed 310
Helix 8	AA8	B	502	506	Right-handed 310
Helix 9	AA9	B	873	875	Right-handed 310
Helix 10	AB1	C	201	205	Right-handed 310
Helix 11	AB2	C	259	269	Right-handed alpha
Helix 12	AB3	C	294	304	Right-handed alpha
Helix 13	AB4	D	128	133	Right-handed alpha
Helix 14	AB5	D	333	340	Right-handed alpha
Helix 15	AB6	D	460	466	Right-handed alpha
Helix 16	AB7	D	492	494	Right-handed 310
Helix 17	AB8	D	502	506	Right-handed 310
Helix 18	AB9	D	873	875	Right-handed 310

There are 50 sheets in PDB entry 6VXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	19	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	378	382	anti-parallel
Strand 4	A	369	374	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	32	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	44	48	anti-parallel
Strand 4	A	51	55	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	75	79	anti-parallel
Strand 3	A	82	86	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	118	120	anti-parallel
Strand 3	A	133	134	anti-parallel
Strand 4	A	143	144	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	167	178	anti-parallel
Strand 3	A	182	192	anti-parallel
Strand 4	A	211	214	anti-parallel
Strand 5	A	306	310	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	223	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	234	first strand
Strand 2	A	239	246	anti-parallel
Strand 3	A	252	258	anti-parallel
Strand 4	A	319	321	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	332	first strand
Strand 2	A	340	345	anti-parallel
Strand 3	A	349	354	anti-parallel
Strand 4	A	360	364	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	446	451	anti-parallel
Strand 3	B	438	443	anti-parallel
Strand 4	B	430	431	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	64	68	anti-parallel
Strand 4	B	75	80	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	134	138	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	169	first strand
Strand 2	B	174	181	anti-parallel
Strand 3	B	203	209	anti-parallel
Strand 4	B	217	224	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	243	251	anti-parallel
Strand 3	B	238	239	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	243	251	anti-parallel
Strand 3	B	263	268	anti-parallel
Strand 4	B	275	281	anti-parallel
Strand 5	B	362	363	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	300	first strand
Strand 2	B	305	311	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	371	373	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	383	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	398	403	anti-parallel
Strand 4	B	414	418	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	482	first strand
Strand 2	B	473	475	anti-parallel
Strand 3	B	496	497	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	522	524	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	548	first strand
Strand 2	B	532	536	anti-parallel
Strand 3	B	574	578	anti-parallel
Strand 4	B	582	585	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	668	first strand
Strand 2	B	677	685	anti-parallel
Strand 3	B	718	723	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	B	743	751	parallel
Strand 3	B	730	736	anti-parallel
Strand 4	B	694	698	anti-parallel
Strand 5	B	706	709	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	759	first strand
Strand 2	B	771	776	anti-parallel
Strand 3	B	805	809	anti-parallel
Strand 4	B	800	801	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	763	765	first strand
Strand 2	B	831	841	parallel
Strand 3	B	821	828	anti-parallel
Strand 4	B	784	788	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	849	first strand
Strand 2	B	859	863	anti-parallel
Strand 3	B	905	909	anti-parallel
Strand 4	B	889	893	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	877	880	first strand
Strand 2	B	926	929	anti-parallel
Strand 3	B	932	934	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	19	first strand
Strand 2	C	385	390	anti-parallel
Strand 3	C	378	382	anti-parallel
Strand 4	C	369	374	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	32	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	44	48	anti-parallel
Strand 4	C	51	55	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	75	79	anti-parallel
Strand 3	C	82	86	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	118	120	anti-parallel
Strand 3	C	133	134	anti-parallel
Strand 4	C	143	144	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	167	178	anti-parallel
Strand 3	C	182	192	anti-parallel
Strand 4	C	211	214	anti-parallel
Strand 5	C	306	310	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	223	224	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	234	first strand
Strand 2	C	239	246	anti-parallel
Strand 3	C	252	258	anti-parallel
Strand 4	C	319	321	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	332	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	C	349	354	anti-parallel
Strand 4	C	360	364	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	446	451	anti-parallel
Strand 3	D	438	443	anti-parallel
Strand 4	D	430	431	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	64	68	anti-parallel
Strand 4	D	75	80	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	112	first strand
Strand 2	D	122	126	anti-parallel
Strand 3	D	134	138	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	169	first strand
Strand 2	D	174	181	anti-parallel
Strand 3	D	203	209	anti-parallel
Strand 4	D	217	224	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	234	first strand
Strand 2	D	243	251	anti-parallel
Strand 3	D	238	239	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	234	first strand
Strand 2	D	243	251	anti-parallel
Strand 3	D	263	268	anti-parallel
Strand 4	D	275	281	anti-parallel
Strand 5	D	362	363	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	300	first strand
Strand 2	D	305	311	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	371	373	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	383	first strand
Strand 2	D	388	393	anti-parallel
Strand 3	D	398	403	anti-parallel
Strand 4	D	414	418	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	480	482	first strand
Strand 2	D	473	475	anti-parallel
Strand 3	D	496	497	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	510	first strand
Strand 2	D	522	524	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	548	first strand
Strand 2	D	532	536	anti-parallel
Strand 3	D	574	578	anti-parallel
Strand 4	D	582	585	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	663	668	first strand
Strand 2	D	677	685	anti-parallel
Strand 3	D	718	723	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	671	673	first strand
Strand 2	D	743	751	parallel
Strand 3	D	730	736	anti-parallel
Strand 4	D	694	698	anti-parallel
Strand 5	D	706	709	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	759	first strand
Strand 2	D	771	776	anti-parallel
Strand 3	D	805	809	anti-parallel
Strand 4	D	800	801	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	763	765	first strand
Strand 2	D	831	841	parallel
Strand 3	D	821	828	anti-parallel
Strand 4	D	784	788	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	846	849	first strand
Strand 2	D	859	863	anti-parallel
Strand 3	D	905	909	anti-parallel
Strand 4	D	889	893	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	877	880	first strand
Strand 2	D	926	929	anti-parallel
Strand 3	D	932	934	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VXK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXK