Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VXM entry

There are 7 chains in PDB entry 6VXM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 203	THR 491
B	LYS 203	THR 491
C	LYS 203	THR 491
D	LYS 203	THR 491
E	LYS 203	THR 491
F	LYS 203	THR 491
G	LYS 203	THR 491

There are 63 helices in PDB entry 6VXM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	204	228	Right-handed alpha
Helix 2	AA2	A	238	266	Right-handed alpha
Helix 3	AA3	A	277	304	Right-handed alpha
Helix 4	AA4	A	306	325	Right-handed alpha
Helix 5	AA5	A	325	341	Right-handed alpha
Helix 6	AA6	A	382	384	Right-handed 310
Helix 7	AA7	A	410	412	Right-handed 310
Helix 8	AA8	A	413	427	Right-handed alpha
Helix 9	AA9	A	463	484	Right-handed alpha
Helix 10	AB1	B	204	228	Right-handed alpha
Helix 11	AB2	B	238	266	Right-handed alpha
Helix 12	AB3	B	277	304	Right-handed alpha
Helix 13	AB4	B	306	325	Right-handed alpha
Helix 14	AB5	B	325	341	Right-handed alpha
Helix 15	AB6	B	382	384	Right-handed 310
Helix 16	AB7	B	410	412	Right-handed 310
Helix 17	AB8	B	413	427	Right-handed alpha
Helix 18	AB9	B	463	484	Right-handed alpha
Helix 19	AC1	C	204	228	Right-handed alpha
Helix 20	AC2	C	238	266	Right-handed alpha
Helix 21	AC3	C	277	304	Right-handed alpha
Helix 22	AC4	C	306	325	Right-handed alpha
Helix 23	AC5	C	325	341	Right-handed alpha
Helix 24	AC6	C	382	384	Right-handed 310
Helix 25	AC7	C	410	412	Right-handed 310
Helix 26	AC8	C	413	427	Right-handed alpha
Helix 27	AC9	C	463	484	Right-handed alpha
Helix 28	AD1	D	204	228	Right-handed alpha
Helix 29	AD2	D	238	266	Right-handed alpha
Helix 30	AD3	D	277	304	Right-handed alpha
Helix 31	AD4	D	306	325	Right-handed alpha
Helix 32	AD5	D	325	341	Right-handed alpha
Helix 33	AD6	D	382	384	Right-handed 310
Helix 34	AD7	D	410	412	Right-handed 310
Helix 35	AD8	D	413	427	Right-handed alpha
Helix 36	AD9	D	463	484	Right-handed alpha
Helix 37	AE1	E	204	228	Right-handed alpha
Helix 38	AE2	E	238	266	Right-handed alpha
Helix 39	AE3	E	277	304	Right-handed alpha
Helix 40	AE4	E	306	325	Right-handed alpha
Helix 41	AE5	E	325	341	Right-handed alpha
Helix 42	AE6	E	382	384	Right-handed 310
Helix 43	AE7	E	410	412	Right-handed 310
Helix 44	AE8	E	413	427	Right-handed alpha
Helix 45	AE9	E	463	484	Right-handed alpha
Helix 46	AF1	F	204	228	Right-handed alpha
Helix 47	AF2	F	238	266	Right-handed alpha
Helix 48	AF3	F	277	304	Right-handed alpha
Helix 49	AF4	F	306	325	Right-handed alpha
Helix 50	AF5	F	325	341	Right-handed alpha
Helix 51	AF6	F	382	384	Right-handed 310
Helix 52	AF7	F	410	412	Right-handed 310
Helix 53	AF8	F	413	427	Right-handed alpha
Helix 54	AF9	F	463	484	Right-handed alpha
Helix 55	AG1	G	204	228	Right-handed alpha
Helix 56	AG2	G	238	266	Right-handed alpha
Helix 57	AG3	G	277	304	Right-handed alpha
Helix 58	AG4	G	306	325	Right-handed alpha
Helix 59	AG5	G	325	341	Right-handed alpha
Helix 60	AG6	G	382	384	Right-handed 310
Helix 61	AG7	G	410	412	Right-handed 310
Helix 62	AG8	G	413	427	Right-handed alpha
Helix 63	AG9	G	463	484	Right-handed alpha

There are 8 sheets in PDB entry 6VXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	355	362	anti-parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	376	380	anti-parallel
Strand 5	G	389	391	anti-parallel
Strand 6	G	349	352	anti-parallel
Strand 7	G	355	362	anti-parallel
Strand 8	G	366	370	anti-parallel
Strand 9	G	376	380	anti-parallel
Strand 10	F	389	391	anti-parallel
Strand 11	F	349	352	anti-parallel
Strand 12	F	355	362	anti-parallel
Strand 13	F	366	370	anti-parallel
Strand 14	F	376	380	anti-parallel
Strand 15	E	389	391	anti-parallel
Strand 16	E	349	352	anti-parallel
Strand 17	E	355	362	anti-parallel
Strand 18	E	366	370	anti-parallel
Strand 19	E	376	380	anti-parallel
Strand 20	D	389	391	anti-parallel
Strand 21	D	349	352	anti-parallel
Strand 22	D	355	362	anti-parallel
Strand 23	D	366	370	anti-parallel
Strand 24	D	376	380	anti-parallel
Strand 25	C	389	391	anti-parallel
Strand 26	C	349	352	anti-parallel
Strand 27	C	355	362	anti-parallel
Strand 28	C	366	370	anti-parallel
Strand 29	C	376	380	anti-parallel
Strand 30	B	389	391	anti-parallel
Strand 31	B	349	352	anti-parallel
Strand 32	B	355	362	anti-parallel
Strand 33	B	366	370	anti-parallel
Strand 34	B	376	380	anti-parallel
Strand 35	A	389	391	anti-parallel
Strand 36	A	349	352	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	446	first strand
Strand 2	A	449	459	anti-parallel
Strand 3	A	397	407	anti-parallel
Strand 4	A	487	488	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	446	first strand
Strand 2	B	449	459	anti-parallel
Strand 3	B	397	407	anti-parallel
Strand 4	B	487	488	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	446	first strand
Strand 2	C	449	459	anti-parallel
Strand 3	C	397	407	anti-parallel
Strand 4	C	487	488	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	446	first strand
Strand 2	D	449	459	anti-parallel
Strand 3	D	397	407	anti-parallel
Strand 4	D	487	488	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	446	first strand
Strand 2	E	449	459	anti-parallel
Strand 3	E	397	407	anti-parallel
Strand 4	E	487	488	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	439	446	first strand
Strand 2	F	449	459	anti-parallel
Strand 3	F	397	407	anti-parallel
Strand 4	F	487	488	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	439	446	first strand
Strand 2	G	449	459	anti-parallel
Strand 3	G	397	407	anti-parallel
Strand 4	G	487	488	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VXM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXM