Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VXN entry

There are 7 chains in PDB entry 6VXN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 204	THR 491
B	SER 204	THR 491
C	SER 204	THR 491
D	SER 204	THR 491
E	SER 204	THR 491
F	SER 204	THR 491
G	SER 204	THR 491

There are 56 helices in PDB entry 6VXN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	204	227	Right-handed alpha
Helix 2	AA2	A	238	267	Right-handed alpha
Helix 3	AA3	A	277	300	Right-handed alpha
Helix 4	AA4	A	315	341	Right-handed alpha
Helix 5	AA5	A	382	385	Right-handed 310
Helix 6	AA6	A	410	412	Right-handed 310
Helix 7	AA7	A	413	428	Right-handed alpha
Helix 8	AA8	A	462	484	Right-handed alpha
Helix 9	AA9	B	205	227	Right-handed alpha
Helix 10	AB1	B	238	267	Right-handed alpha
Helix 11	AB2	B	277	300	Right-handed alpha
Helix 12	AB3	B	315	341	Right-handed alpha
Helix 13	AB4	B	382	385	Right-handed 310
Helix 14	AB5	B	410	412	Right-handed 310
Helix 15	AB6	B	413	428	Right-handed alpha
Helix 16	AB7	B	462	484	Right-handed alpha
Helix 17	AB8	C	205	227	Right-handed alpha
Helix 18	AB9	C	238	267	Right-handed alpha
Helix 19	AC1	C	277	300	Right-handed alpha
Helix 20	AC2	C	315	341	Right-handed alpha
Helix 21	AC3	C	382	385	Right-handed 310
Helix 22	AC4	C	410	412	Right-handed 310
Helix 23	AC5	C	413	428	Right-handed alpha
Helix 24	AC6	C	462	484	Right-handed alpha
Helix 25	AC7	D	205	227	Right-handed alpha
Helix 26	AC8	D	238	267	Right-handed alpha
Helix 27	AC9	D	277	300	Right-handed alpha
Helix 28	AD1	D	315	341	Right-handed alpha
Helix 29	AD2	D	382	385	Right-handed 310
Helix 30	AD3	D	410	412	Right-handed 310
Helix 31	AD4	D	413	428	Right-handed alpha
Helix 32	AD5	D	462	484	Right-handed alpha
Helix 33	AD6	E	205	227	Right-handed alpha
Helix 34	AD7	E	238	267	Right-handed alpha
Helix 35	AD8	E	277	300	Right-handed alpha
Helix 36	AD9	E	315	341	Right-handed alpha
Helix 37	AE1	E	382	385	Right-handed 310
Helix 38	AE2	E	410	412	Right-handed 310
Helix 39	AE3	E	413	428	Right-handed alpha
Helix 40	AE4	E	462	484	Right-handed alpha
Helix 41	AE5	F	205	227	Right-handed alpha
Helix 42	AE6	F	238	267	Right-handed alpha
Helix 43	AE7	F	277	300	Right-handed alpha
Helix 44	AE8	F	315	341	Right-handed alpha
Helix 45	AE9	F	382	385	Right-handed 310
Helix 46	AF1	F	410	412	Right-handed 310
Helix 47	AF2	F	413	428	Right-handed alpha
Helix 48	AF3	F	462	484	Right-handed alpha
Helix 49	AF4	G	205	227	Right-handed alpha
Helix 50	AF5	G	238	267	Right-handed alpha
Helix 51	AF6	G	277	300	Right-handed alpha
Helix 52	AF7	G	315	341	Right-handed alpha
Helix 53	AF8	G	382	385	Right-handed 310
Helix 54	AF9	G	410	412	Right-handed 310
Helix 55	AG1	G	413	428	Right-handed alpha
Helix 56	AG2	G	462	484	Right-handed alpha

There are 8 sheets in PDB entry 6VXN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	355	362	anti-parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	376	380	anti-parallel
Strand 5	G	389	391	anti-parallel
Strand 6	G	349	352	anti-parallel
Strand 7	G	355	362	anti-parallel
Strand 8	G	366	370	anti-parallel
Strand 9	G	376	380	anti-parallel
Strand 10	F	389	391	anti-parallel
Strand 11	F	349	352	anti-parallel
Strand 12	F	355	362	anti-parallel
Strand 13	F	366	370	anti-parallel
Strand 14	F	376	380	anti-parallel
Strand 15	E	389	391	anti-parallel
Strand 16	E	349	352	anti-parallel
Strand 17	E	355	362	anti-parallel
Strand 18	E	366	370	anti-parallel
Strand 19	E	376	380	anti-parallel
Strand 20	D	389	391	anti-parallel
Strand 21	D	349	352	anti-parallel
Strand 22	D	355	362	anti-parallel
Strand 23	D	366	370	anti-parallel
Strand 24	D	376	380	anti-parallel
Strand 25	C	389	391	anti-parallel
Strand 26	C	349	352	anti-parallel
Strand 27	C	355	362	anti-parallel
Strand 28	C	366	370	anti-parallel
Strand 29	C	376	380	anti-parallel
Strand 30	B	389	391	anti-parallel
Strand 31	B	349	352	anti-parallel
Strand 32	B	355	362	anti-parallel
Strand 33	B	366	370	anti-parallel
Strand 34	B	376	380	anti-parallel
Strand 35	A	389	391	anti-parallel
Strand 36	A	349	352	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	446	first strand
Strand 2	A	449	459	anti-parallel
Strand 3	A	397	407	anti-parallel
Strand 4	A	487	488	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	446	first strand
Strand 2	B	449	459	anti-parallel
Strand 3	B	397	407	anti-parallel
Strand 4	B	487	488	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	446	first strand
Strand 2	C	449	459	anti-parallel
Strand 3	C	397	407	anti-parallel
Strand 4	C	487	488	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	446	first strand
Strand 2	D	449	459	anti-parallel
Strand 3	D	397	407	anti-parallel
Strand 4	D	487	488	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	446	first strand
Strand 2	E	449	459	anti-parallel
Strand 3	E	397	407	anti-parallel
Strand 4	E	487	488	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	439	446	first strand
Strand 2	F	449	459	anti-parallel
Strand 3	F	397	407	anti-parallel
Strand 4	F	487	488	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	439	446	first strand
Strand 2	G	449	459	anti-parallel
Strand 3	G	397	407	anti-parallel
Strand 4	G	487	488	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VXN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXN