Analysis of interatomic Contacts of Structural Units in PDB entry:
6VY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VY2 entry

There are 12 chains in PDB entry 6VY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	LYS 502
B	LEU 523	ASP 664
C	GLU 32	LYS 502
D	LEU 523	ASP 664
E	GLU 32	LYS 502
F	LEU 523	ASP 664
H	ASP 2	SER 113
I	ASP 2	SER 113
J	ASP 2	SER 113
L	SER 2	LEU 106
M	SER 2	LEU 106
N	SER 2	LEU 106

There are 60 helices in PDB entry 6VY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	116	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	177	179	Right-handed 310
Helix 4	AA4	A	205	209	Right-handed 310
Helix 5	AA5	A	335	353	Right-handed alpha
Helix 6	AA6	A	368	373	Right-handed alpha
Helix 7	AA7	A	377	381	Right-handed 310
Helix 8	AA8	A	387	391	Right-handed 310
Helix 9	AA9	A	474	484	Right-handed alpha
Helix 10	AB1	B	529	535	Right-handed alpha
Helix 11	AB2	B	537	544	Right-handed alpha
Helix 12	AB3	B	571	597	Right-handed alpha
Helix 13	AB4	B	618	625	Right-handed alpha
Helix 14	AB5	B	627	649	Right-handed alpha
Helix 15	AB6	B	650	663	Right-handed alpha
Helix 16	AB7	C	100	116	Right-handed alpha
Helix 17	AB8	C	122	126	Right-handed 310
Helix 18	AB9	C	177	179	Right-handed 310
Helix 19	AC1	C	205	209	Right-handed 310
Helix 20	AC2	C	335	353	Right-handed alpha
Helix 21	AC3	C	368	373	Right-handed alpha
Helix 22	AC4	C	377	381	Right-handed 310
Helix 23	AC5	C	387	391	Right-handed 310
Helix 24	AC6	C	474	484	Right-handed alpha
Helix 25	AC7	D	529	535	Right-handed alpha
Helix 26	AC8	D	537	544	Right-handed alpha
Helix 27	AC9	D	571	597	Right-handed alpha
Helix 28	AD1	D	618	625	Right-handed alpha
Helix 29	AD2	D	627	649	Right-handed alpha
Helix 30	AD3	D	650	663	Right-handed alpha
Helix 31	AD4	E	100	116	Right-handed alpha
Helix 32	AD5	E	122	126	Right-handed 310
Helix 33	AD6	E	177	179	Right-handed 310
Helix 34	AD7	E	205	209	Right-handed 310
Helix 35	AD8	E	335	353	Right-handed alpha
Helix 36	AD9	E	368	373	Right-handed alpha
Helix 37	AE1	E	377	381	Right-handed 310
Helix 38	AE2	E	387	391	Right-handed 310
Helix 39	AE3	E	474	484	Right-handed alpha
Helix 40	AE4	F	529	535	Right-handed alpha
Helix 41	AE5	F	537	544	Right-handed alpha
Helix 42	AE6	F	571	597	Right-handed alpha
Helix 43	AE7	F	618	625	Right-handed alpha
Helix 44	AE8	F	627	649	Right-handed alpha
Helix 45	AE9	F	650	663	Right-handed alpha
Helix 46	AF1	H	28	32	Right-handed 310
Helix 47	AF2	H	61	64	Right-handed 310
Helix 48	AF3	H	83	87	Right-handed 310
Helix 49	AF4	I	28	32	Right-handed 310
Helix 50	AF5	I	61	64	Right-handed 310
Helix 51	AF6	I	83	87	Right-handed 310
Helix 52	AF7	J	28	32	Right-handed 310
Helix 53	AF8	J	61	64	Right-handed 310
Helix 54	AF9	J	83	87	Right-handed 310
Helix 55	AG1	L	26	27	Right-handed 310
Helix 56	AG2	L	79	83	Right-handed 310
Helix 57	AG3	M	26	27	Right-handed 310
Helix 58	AG4	M	79	83	Right-handed 310
Helix 59	AG5	N	26	27	Right-handed 310
Helix 60	AG6	N	79	83	Right-handed 310

There are 45 sheets in PDB entry 6VY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	129	131	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	457	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	421	anti-parallel
Strand 6	A	382	385	anti-parallel
Strand 7	A	374	376	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	457	anti-parallel
Strand 4	A	466	470	anti-parallel
Strand 5	A	359	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	312	first strand
Strand 2	A	315	323	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	86	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	238	239	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	157	162	anti-parallel
Strand 3	C	129	131	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	432	435	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	443	457	anti-parallel
Strand 3	C	284	298	anti-parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	413	421	anti-parallel
Strand 6	C	382	385	anti-parallel
Strand 7	C	374	376	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	443	457	anti-parallel
Strand 4	C	466	470	anti-parallel
Strand 5	C	359	361	parallel
Strand 6	C	394	395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	312	first strand
Strand 2	C	315	323	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	238	239	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	174	first strand
Strand 2	E	157	162	anti-parallel
Strand 3	E	129	131	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	203	first strand
Strand 2	E	432	435	parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	443	457	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	421	anti-parallel
Strand 6	E	382	385	anti-parallel
Strand 7	E	374	376	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	443	457	anti-parallel
Strand 4	E	466	470	anti-parallel
Strand 5	E	359	361	parallel
Strand 6	E	394	395	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	312	first strand
Strand 2	E	315	323	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	8	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	8	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	100	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	100	anti-parallel
Strand 4	I	100	103	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	8	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	100	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	100	anti-parallel
Strand 4	J	100	103	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	32	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	66	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	91	anti-parallel
Strand 4	M	32	38	anti-parallel
Strand 5	M	44	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	91	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	24	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	62	66	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	84	91	anti-parallel
Strand 4	N	32	38	anti-parallel
Strand 5	N	44	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	84	91	anti-parallel
Strand 4	N	97	98	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VY2