Analysis of interatomic Contacts of Structural Units in PDB entry:
6VY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VY6 entry

There are 3 chains in PDB entry 6VY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 186CYS 601
H
 GLU 1CYS 230
L
 SER 2GLU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6VY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 207Right-handed 310
Helix 2
AA2
A
302 307Right-handed 310
Helix 3
AA3
A
373 375Right-handed 310
Helix 4
AA4
A
378 382Right-handed 310
Helix 5
AA5
A
393 398Right-handed alpha
Helix 6
AA6
H
28 32Right-handed 310
Helix 7
AA7
H
87 91Right-handed 310
Helix 8
AA8
H
201 205Right-handed 310
Helix 9
AA9
H
215 218Right-handed 310
Helix 10
AB1
L
27 31Right-handed 310
Helix 11
AB2
L
79 83Right-handed 310
Helix 12
AB3
L
124 130Right-handed alpha
Helix 13
AB4
L
184 190Right-handed alpha
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There are 19 sheets in PDB entry 6VY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
589 596anti-parallel
Strand 3
A
571 580anti-parallel
Strand 4
A
558 568anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 225first strand
Strand 2
A
228 237anti-parallel
Strand 3
A
244 257anti-parallel
Strand 4
A
263 271anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 287first strand
Strand 2
A
290 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
332 337anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
425 430parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
361 371anti-parallel
Strand 5
A
347 350anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
425 430parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
361 371anti-parallel
Strand 5
A
356 358anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 447first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
465 471anti-parallel
Strand 4
A
476 479anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
520 526anti-parallel
Strand 3
A
535 540anti-parallel
Strand 4
A
545 550anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 125parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 125parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
114 117anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 138first strand
Strand 2
H
149 159anti-parallel
Strand 3
H
190 199anti-parallel
Strand 4
H
177 179anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 138first strand
Strand 2
H
149 159anti-parallel
Strand 3
H
190 199anti-parallel
Strand 4
H
183 184anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
165 168first strand
Strand 2
H
209 214anti-parallel
Strand 3
H
219 224anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
104 108parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
104 108parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
97 100anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
133 142anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
162 164anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
133 142anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
168 169anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 158first strand
Strand 2
L
148 153anti-parallel
Strand 3
L
194 200anti-parallel
Strand 4
L
203 209anti-parallel
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