Analysis of interatomic Contacts of Structural Units in PDB entry:
6VY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VY9 entry

There are 8 chains in PDB entry 6VY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 31	THR 446
B	SER 31	THR 446
G	SER 31	THR 446
H	SER 31	THR 446
F	SER 31	THR 446
D	SER 31	THR 446
E	SER 31	THR 446
C	SER 31	THR 446

There are119 helices in PDB entry 6VY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	42	Right-handed 310
Helix 2	AA2	A	46	67	Right-handed alpha
Helix 3	AA3	A	70	85	Right-handed alpha
Helix 4	AA4	A	85	90	Right-handed alpha
Helix 5	AA5	A	141	154	Right-handed alpha
Helix 6	AA6	A	161	172	Right-handed alpha
Helix 7	AA7	A	175	183	Right-handed alpha
Helix 8	AA8	A	217	225	Right-handed alpha
Helix 9	AA9	A	227	243	Right-handed alpha
Helix 10	AB1	A	246	260	Right-handed alpha
Helix 11	AB2	A	291	301	Right-handed alpha
Helix 12	AB3	A	302	308	Right-handed alpha
Helix 13	AB4	A	308	325	Right-handed alpha
Helix 14	AB5	A	378	393	Right-handed alpha
Helix 15	AB6	A	397	408	Right-handed alpha
Helix 16	AB7	B	34	42	Right-handed 310
Helix 17	AB8	B	46	67	Right-handed alpha
Helix 18	AB9	B	70	89	Right-handed alpha
Helix 19	AC1	B	141	154	Right-handed alpha
Helix 20	AC2	B	161	172	Right-handed alpha
Helix 21	AC3	B	175	183	Right-handed alpha
Helix 22	AC4	B	217	225	Right-handed alpha
Helix 23	AC5	B	229	243	Right-handed alpha
Helix 24	AC6	B	246	260	Right-handed alpha
Helix 25	AC7	B	291	301	Right-handed alpha
Helix 26	AC8	B	302	308	Right-handed alpha
Helix 27	AC9	B	309	325	Right-handed alpha
Helix 28	AD1	B	378	394	Right-handed alpha
Helix 29	AD2	B	397	410	Right-handed alpha
Helix 30	AD3	G	34	42	Right-handed 310
Helix 31	AD4	G	46	67	Right-handed alpha
Helix 32	AD5	G	70	85	Right-handed alpha
Helix 33	AD6	G	86	90	Right-handed 310
Helix 34	AD7	G	141	154	Right-handed alpha
Helix 35	AD8	G	161	172	Right-handed alpha
Helix 36	AD9	G	175	183	Right-handed alpha
Helix 37	AE1	G	217	225	Right-handed alpha
Helix 38	AE2	G	229	243	Right-handed alpha
Helix 39	AE3	G	246	260	Right-handed alpha
Helix 40	AE4	G	291	301	Right-handed alpha
Helix 41	AE5	G	302	308	Right-handed alpha
Helix 42	AE6	G	309	325	Right-handed alpha
Helix 43	AE7	G	378	394	Right-handed alpha
Helix 44	AE8	G	397	410	Right-handed alpha
Helix 45	AE9	H	34	42	Right-handed 310
Helix 46	AF1	H	46	67	Right-handed alpha
Helix 47	AF2	H	70	85	Right-handed alpha
Helix 48	AF3	H	85	90	Right-handed alpha
Helix 49	AF4	H	141	154	Right-handed alpha
Helix 50	AF5	H	161	172	Right-handed alpha
Helix 51	AF6	H	175	183	Right-handed alpha
Helix 52	AF7	H	217	225	Right-handed alpha
Helix 53	AF8	H	229	243	Right-handed alpha
Helix 54	AF9	H	246	260	Right-handed alpha
Helix 55	AG1	H	291	301	Right-handed alpha
Helix 56	AG2	H	302	308	Right-handed alpha
Helix 57	AG3	H	308	325	Right-handed alpha
Helix 58	AG4	H	378	394	Right-handed alpha
Helix 59	AG5	H	397	410	Right-handed alpha
Helix 60	AG6	F	34	42	Right-handed 310
Helix 61	AG7	F	46	67	Right-handed alpha
Helix 62	AG8	F	70	85	Right-handed alpha
Helix 63	AG9	F	86	90	Right-handed 310
Helix 64	AH1	F	141	154	Right-handed alpha
Helix 65	AH2	F	161	172	Right-handed alpha
Helix 66	AH3	F	175	183	Right-handed alpha
Helix 67	AH4	F	217	225	Right-handed alpha
Helix 68	AH5	F	227	243	Right-handed alpha
Helix 69	AH6	F	246	260	Right-handed alpha
Helix 70	AH7	F	291	301	Right-handed alpha
Helix 71	AH8	F	302	308	Right-handed alpha
Helix 72	AH9	F	308	325	Right-handed alpha
Helix 73	AI1	F	378	394	Right-handed alpha
Helix 74	AI2	F	397	408	Right-handed alpha
Helix 75	AI3	D	34	42	Right-handed 310
Helix 76	AI4	D	46	67	Right-handed alpha
Helix 77	AI5	D	70	85	Right-handed alpha
Helix 78	AI6	D	86	90	Right-handed 310
Helix 79	AI7	D	141	154	Right-handed alpha
Helix 80	AI8	D	161	172	Right-handed alpha
Helix 81	AI9	D	175	183	Right-handed alpha
Helix 82	AJ1	D	217	225	Right-handed alpha
Helix 83	AJ2	D	227	241	Right-handed alpha
Helix 84	AJ3	D	246	260	Right-handed alpha
Helix 85	AJ4	D	291	301	Right-handed alpha
Helix 86	AJ5	D	302	308	Right-handed alpha
Helix 87	AJ6	D	308	325	Right-handed alpha
Helix 88	AJ7	D	378	394	Right-handed alpha
Helix 89	AJ8	D	397	408	Right-handed alpha
Helix 90	AJ9	E	34	42	Right-handed 310
Helix 91	AK1	E	46	67	Right-handed alpha
Helix 92	AK2	E	70	85	Right-handed alpha
Helix 93	AK3	E	86	90	Right-handed 310
Helix 94	AK4	E	141	154	Right-handed alpha
Helix 95	AK5	E	161	172	Right-handed alpha
Helix 96	AK6	E	175	183	Right-handed alpha
Helix 97	AK7	E	217	225	Right-handed alpha
Helix 98	AK8	E	227	243	Right-handed alpha
Helix 99	AK9	E	246	260	Right-handed alpha
Helix 100	AL1	E	291	301	Right-handed alpha
Helix 101	AL2	E	302	308	Right-handed alpha
Helix 102	AL3	E	308	325	Right-handed alpha
Helix 103	AL4	E	378	394	Right-handed alpha
Helix 104	AL5	E	397	410	Right-handed alpha
Helix 105	AL6	C	34	42	Right-handed 310
Helix 106	AL7	C	46	67	Right-handed alpha
Helix 107	AL8	C	70	85	Right-handed alpha
Helix 108	AL9	C	86	90	Right-handed 310
Helix 109	AM1	C	141	154	Right-handed alpha
Helix 110	AM2	C	161	172	Right-handed alpha
Helix 111	AM3	C	175	183	Right-handed alpha
Helix 112	AM4	C	217	225	Right-handed alpha
Helix 113	AM5	C	227	241	Right-handed alpha
Helix 114	AM6	C	246	260	Right-handed alpha
Helix 115	AM7	C	291	301	Right-handed alpha
Helix 116	AM8	C	302	308	Right-handed alpha
Helix 117	AM9	C	308	325	Right-handed alpha
Helix 118	AN1	C	378	394	Right-handed alpha
Helix 119	AN2	C	397	408	Right-handed alpha

There are 8 sheets in PDB entry 6VY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	114	first strand
Strand 2	A	117	125	anti-parallel
Strand 3	A	197	203	anti-parallel
Strand 4	A	209	215	anti-parallel
Strand 5	A	268	272	anti-parallel
Strand 6	A	281	287	anti-parallel
Strand 7	A	353	359	anti-parallel
Strand 8	A	367	373	anti-parallel
Strand 9	A	422	430	anti-parallel
Strand 10	A	434	441	anti-parallel
Strand 11	A	107	114	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	114	first strand
Strand 2	B	117	125	anti-parallel
Strand 3	B	197	203	anti-parallel
Strand 4	B	209	215	anti-parallel
Strand 5	B	268	272	anti-parallel
Strand 6	B	281	287	anti-parallel
Strand 7	B	353	359	anti-parallel
Strand 8	B	367	373	anti-parallel
Strand 9	B	422	430	anti-parallel
Strand 10	B	434	441	anti-parallel
Strand 11	B	107	114	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	114	first strand
Strand 2	G	117	125	anti-parallel
Strand 3	G	197	203	anti-parallel
Strand 4	G	209	215	anti-parallel
Strand 5	G	268	272	anti-parallel
Strand 6	G	281	287	anti-parallel
Strand 7	G	353	359	anti-parallel
Strand 8	G	367	373	anti-parallel
Strand 9	G	422	430	anti-parallel
Strand 10	G	434	441	anti-parallel
Strand 11	G	107	114	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	107	113	first strand
Strand 2	H	120	125	anti-parallel
Strand 3	H	197	203	anti-parallel
Strand 4	H	209	215	anti-parallel
Strand 5	H	268	272	anti-parallel
Strand 6	H	281	287	anti-parallel
Strand 7	H	353	359	anti-parallel
Strand 8	H	367	373	anti-parallel
Strand 9	H	422	430	anti-parallel
Strand 10	H	434	441	anti-parallel
Strand 11	H	107	113	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	114	first strand
Strand 2	F	117	125	anti-parallel
Strand 3	F	197	204	anti-parallel
Strand 4	F	208	215	anti-parallel
Strand 5	F	268	272	anti-parallel
Strand 6	F	281	287	anti-parallel
Strand 7	F	353	359	anti-parallel
Strand 8	F	367	373	anti-parallel
Strand 9	F	422	430	anti-parallel
Strand 10	F	434	441	anti-parallel
Strand 11	F	107	114	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	113	first strand
Strand 2	D	120	125	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	209	215	anti-parallel
Strand 5	D	268	272	anti-parallel
Strand 6	D	281	287	anti-parallel
Strand 7	D	353	359	anti-parallel
Strand 8	D	367	373	anti-parallel
Strand 9	D	422	430	anti-parallel
Strand 10	D	434	441	anti-parallel
Strand 11	D	107	113	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	114	first strand
Strand 2	E	117	125	anti-parallel
Strand 3	E	197	203	anti-parallel
Strand 4	E	209	215	anti-parallel
Strand 5	E	268	272	anti-parallel
Strand 6	E	281	287	anti-parallel
Strand 7	E	353	359	anti-parallel
Strand 8	E	367	373	anti-parallel
Strand 9	E	422	430	anti-parallel
Strand 10	E	434	441	anti-parallel
Strand 11	E	107	114	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	113	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	197	203	anti-parallel
Strand 4	C	209	215	anti-parallel
Strand 5	C	268	272	anti-parallel
Strand 6	C	281	287	anti-parallel
Strand 7	C	353	359	anti-parallel
Strand 8	C	367	373	anti-parallel
Strand 9	C	422	430	anti-parallel
Strand 10	C	434	441	anti-parallel
Strand 11	C	107	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VY9