Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VYC entry

There are 2 chains in PDB entry 6VYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 394	HIS 730
B	GLN 394	HIS 730

There are 2 helices in PDB entry 6VYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	631	635	Right-handed 310
Helix 2	AA2	B	631	635	Right-handed 310

There are 16 sheets in PDB entry 6VYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	404	first strand
Strand 2	A	722	729	anti-parallel
Strand 3	A	711	717	anti-parallel
Strand 4	A	699	706	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	416	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	442	448	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	A	465	470	anti-parallel
Strand 3	A	474	479	anti-parallel
Strand 4	A	484	490	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	503	first strand
Strand 2	A	509	515	anti-parallel
Strand 3	A	525	531	anti-parallel
Strand 4	A	536	540	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	555	first strand
Strand 2	A	561	566	anti-parallel
Strand 3	A	570	575	anti-parallel
Strand 4	A	583	586	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	603	608	anti-parallel
Strand 3	A	612	617	anti-parallel
Strand 4	A	624	629	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	641	first strand
Strand 2	A	647	650	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	665	668	anti-parallel
Strand 3	A	675	678	anti-parallel
Strand 4	A	688	691	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	404	first strand
Strand 2	B	722	729	anti-parallel
Strand 3	B	710	717	anti-parallel
Strand 4	B	699	705	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	416	first strand
Strand 2	B	422	427	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	442	448	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	458	first strand
Strand 2	B	465	470	anti-parallel
Strand 3	B	474	479	anti-parallel
Strand 4	B	484	490	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	503	first strand
Strand 2	B	509	515	anti-parallel
Strand 3	B	525	531	anti-parallel
Strand 4	B	536	541	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	555	first strand
Strand 2	B	561	566	anti-parallel
Strand 3	B	570	575	anti-parallel
Strand 4	B	580	586	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	597	first strand
Strand 2	B	603	608	anti-parallel
Strand 3	B	612	617	anti-parallel
Strand 4	B	624	629	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	642	first strand
Strand 2	B	646	650	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	657	659	first strand
Strand 2	B	665	668	anti-parallel
Strand 3	B	675	678	anti-parallel
Strand 4	B	688	691	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYC