Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VYE entry

There are 2 chains in PDB entry 6VYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2CYS 263
B
 HIS -2CYS 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6VYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 31Right-handed alpha
Helix 3
AA3
A
32 36Right-handed 310
Helix 4
AA4
A
45 59Right-handed alpha
Helix 5
AA5
A
59 64Right-handed alpha
Helix 6
AA6
A
86 95Right-handed alpha
Helix 7
AA7
A
96 99Right-handed 310
Helix 8
AA8
A
100 104Right-handed 310
Helix 9
AA9
A
110 115Right-handed alpha
Helix 10
AB1
A
119 139Right-handed alpha
Helix 11
AB2
A
202 208Right-handed alpha
Helix 12
AB3
A
218 220Right-handed 310
Helix 13
AB4
A
221 230Right-handed alpha
Helix 14
AB5
A
237 245Right-handed 310
Helix 15
AB6
B
12 14Right-handed 310
Helix 16
AB7
B
15 30Right-handed alpha
Helix 17
AB8
B
32 36Right-handed 310
Helix 18
AB9
B
45 59Right-handed alpha
Helix 19
AC1
B
59 65Right-handed alpha
Helix 20
AC2
B
86 95Right-handed alpha
Helix 21
AC3
B
96 99Right-handed 310
Helix 22
AC4
B
100 104Right-handed 310
Helix 23
AC5
B
110 115Right-handed alpha
Helix 24
AC6
B
119 139Right-handed alpha
Helix 25
AC7
B
202 208Right-handed alpha
Helix 26
AC8
B
218 220Right-handed 310
Helix 27
AC9
B
221 230Right-handed alpha
Helix 28
AD1
B
237 245Right-handed 310
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There are 6 sheets in PDB entry 6VYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
248 254parallel
Strand 3
A
211 216parallel
Strand 4
A
155 159parallel
Strand 5
A
38 42parallel
Strand 6
A
69 73parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
183 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
149 150anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
248 254parallel
Strand 3
B
211 216parallel
Strand 4
B
155 159parallel
Strand 5
B
38 42parallel
Strand 6
B
69 73parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
198 201anti-parallel
Strand 3
B
183 186anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
149 150anti-parallel
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