Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VYF entry

There are 4 chains in PDB entry 6VYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 17	SER 487
B	ASP 17	SER 487
C	ASP 17	SER 487
D	ASP 17	SER 487

There are 68 helices in PDB entry 6VYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	38	Right-handed alpha
Helix 2	AA2	A	45	68	Right-handed alpha
Helix 3	AA3	A	153	166	Right-handed alpha
Helix 4	AA4	A	219	229	Right-handed alpha
Helix 5	AA5	A	240	252	Right-handed alpha
Helix 6	AA6	A	292	296	Right-handed 310
Helix 7	AA7	A	303	312	Right-handed alpha
Helix 8	AA8	A	321	326	Right-handed alpha
Helix 9	AA9	A	329	342	Right-handed alpha
Helix 10	AB1	A	348	352	Right-handed 310
Helix 11	AB2	A	357	366	Right-handed alpha
Helix 12	AB3	A	376	383	Right-handed alpha
Helix 13	AB4	A	388	421	Right-handed alpha
Helix 14	AB5	A	422	426	Right-handed 310
Helix 15	AB6	A	444	456	Right-handed alpha
Helix 16	AB7	A	459	461	Right-handed 310
Helix 17	AB8	A	470	486	Right-handed alpha
Helix 18	AB9	B	26	38	Right-handed alpha
Helix 19	AC1	B	45	68	Right-handed alpha
Helix 20	AC2	B	153	166	Right-handed alpha
Helix 21	AC3	B	219	229	Right-handed alpha
Helix 22	AC4	B	240	252	Right-handed alpha
Helix 23	AC5	B	292	296	Right-handed 310
Helix 24	AC6	B	303	312	Right-handed alpha
Helix 25	AC7	B	321	326	Right-handed alpha
Helix 26	AC8	B	329	342	Right-handed alpha
Helix 27	AC9	B	348	352	Right-handed 310
Helix 28	AD1	B	357	366	Right-handed alpha
Helix 29	AD2	B	376	383	Right-handed alpha
Helix 30	AD3	B	388	421	Right-handed alpha
Helix 31	AD4	B	422	426	Right-handed 310
Helix 32	AD5	B	444	456	Right-handed alpha
Helix 33	AD6	B	459	461	Right-handed 310
Helix 34	AD7	B	470	486	Right-handed alpha
Helix 35	AD8	C	26	38	Right-handed alpha
Helix 36	AD9	C	45	68	Right-handed alpha
Helix 37	AE1	C	153	166	Right-handed alpha
Helix 38	AE2	C	219	229	Right-handed alpha
Helix 39	AE3	C	240	252	Right-handed alpha
Helix 40	AE4	C	292	296	Right-handed 310
Helix 41	AE5	C	303	312	Right-handed alpha
Helix 42	AE6	C	321	326	Right-handed alpha
Helix 43	AE7	C	329	342	Right-handed alpha
Helix 44	AE8	C	348	352	Right-handed 310
Helix 45	AE9	C	357	366	Right-handed alpha
Helix 46	AF1	C	376	383	Right-handed alpha
Helix 47	AF2	C	388	421	Right-handed alpha
Helix 48	AF3	C	422	426	Right-handed 310
Helix 49	AF4	C	444	456	Right-handed alpha
Helix 50	AF5	C	459	461	Right-handed 310
Helix 51	AF6	C	470	486	Right-handed alpha
Helix 52	AF7	D	26	38	Right-handed alpha
Helix 53	AF8	D	45	68	Right-handed alpha
Helix 54	AF9	D	153	166	Right-handed alpha
Helix 55	AG1	D	219	229	Right-handed alpha
Helix 56	AG2	D	240	252	Right-handed alpha
Helix 57	AG3	D	292	296	Right-handed 310
Helix 58	AG4	D	303	312	Right-handed alpha
Helix 59	AG5	D	321	326	Right-handed alpha
Helix 60	AG6	D	329	342	Right-handed alpha
Helix 61	AG7	D	348	352	Right-handed 310
Helix 62	AG8	D	357	366	Right-handed alpha
Helix 63	AG9	D	376	383	Right-handed alpha
Helix 64	AH1	D	388	421	Right-handed alpha
Helix 65	AH2	D	422	426	Right-handed 310
Helix 66	AH3	D	444	456	Right-handed alpha
Helix 67	AH4	D	459	461	Right-handed 310
Helix 68	AH5	D	470	486	Right-handed alpha

There are 12 sheets in PDB entry 6VYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	288	291	anti-parallel
Strand 3	A	270	275	anti-parallel
Strand 4	A	260	266	anti-parallel
Strand 5	A	429	434	parallel
Strand 6	A	463	465	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	101	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	121	123	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	234	235	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	288	291	anti-parallel
Strand 3	B	270	275	anti-parallel
Strand 4	B	260	266	anti-parallel
Strand 5	B	429	434	parallel
Strand 6	B	463	465	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	101	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	121	123	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	234	235	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	270	275	anti-parallel
Strand 4	C	260	266	anti-parallel
Strand 5	C	429	434	parallel
Strand 6	C	463	465	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	101	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	234	235	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	288	291	anti-parallel
Strand 3	D	270	275	anti-parallel
Strand 4	D	260	266	anti-parallel
Strand 5	D	429	434	parallel
Strand 6	D	463	465	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	101	first strand
Strand 2	D	110	115	anti-parallel
Strand 3	D	121	123	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	234	235	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYF