Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VYM entry

There are 7 chains in PDB entry 6VYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 27	VAL 280
B	TYR 27	VAL 280
C	TYR 27	VAL 280
D	TYR 27	VAL 280
E	TYR 27	VAL 280
F	TYR 27	VAL 280
G	TYR 27	VAL 280

There are 42 helices in PDB entry 6VYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	60	Right-handed alpha
Helix 2	AA2	A	64	90	Right-handed alpha
Helix 3	AA3	A	94	127	Right-handed alpha
Helix 4	AA4	A	166	171	Right-handed alpha
Helix 5	AA5	A	197	212	Right-handed alpha
Helix 6	AA6	A	245	264	Right-handed alpha
Helix 7	AA7	B	28	60	Right-handed alpha
Helix 8	AA8	B	64	90	Right-handed alpha
Helix 9	AA9	B	94	127	Right-handed alpha
Helix 10	AB1	B	166	171	Right-handed alpha
Helix 11	AB2	B	197	212	Right-handed alpha
Helix 12	AB3	B	245	264	Right-handed alpha
Helix 13	AB4	C	28	60	Right-handed alpha
Helix 14	AB5	C	64	90	Right-handed alpha
Helix 15	AB6	C	94	127	Right-handed alpha
Helix 16	AB7	C	166	171	Right-handed alpha
Helix 17	AB8	C	197	212	Right-handed alpha
Helix 18	AB9	C	245	264	Right-handed alpha
Helix 19	AC1	D	28	60	Right-handed alpha
Helix 20	AC2	D	64	90	Right-handed alpha
Helix 21	AC3	D	94	127	Right-handed alpha
Helix 22	AC4	D	166	171	Right-handed alpha
Helix 23	AC5	D	197	212	Right-handed alpha
Helix 24	AC6	D	245	264	Right-handed alpha
Helix 25	AC7	E	28	60	Right-handed alpha
Helix 26	AC8	E	64	90	Right-handed alpha
Helix 27	AC9	E	94	127	Right-handed alpha
Helix 28	AD1	E	166	171	Right-handed alpha
Helix 29	AD2	E	197	212	Right-handed alpha
Helix 30	AD3	E	245	264	Right-handed alpha
Helix 31	AD4	F	28	60	Right-handed alpha
Helix 32	AD5	F	64	90	Right-handed alpha
Helix 33	AD6	F	94	127	Right-handed alpha
Helix 34	AD7	F	166	171	Right-handed alpha
Helix 35	AD8	F	197	212	Right-handed alpha
Helix 36	AD9	F	245	264	Right-handed alpha
Helix 37	AE1	G	28	60	Right-handed alpha
Helix 38	AE2	G	64	90	Right-handed alpha
Helix 39	AE3	G	94	127	Right-handed alpha
Helix 40	AE4	G	166	171	Right-handed alpha
Helix 41	AE5	G	197	212	Right-handed alpha
Helix 42	AE6	G	245	264	Right-handed alpha

There are 9 sheets in PDB entry 6VYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	138	first strand
Strand 2	A	142	148	anti-parallel
Strand 3	A	153	157	anti-parallel
Strand 4	A	162	164	anti-parallel
Strand 5	G	175	177	anti-parallel
Strand 6	G	135	138	anti-parallel
Strand 7	G	142	148	anti-parallel
Strand 8	G	153	157	anti-parallel
Strand 9	G	162	164	anti-parallel
Strand 10	F	175	177	anti-parallel
Strand 11	F	135	138	anti-parallel
Strand 12	F	142	148	anti-parallel
Strand 13	F	153	157	anti-parallel
Strand 14	F	162	164	anti-parallel
Strand 15	E	175	177	anti-parallel
Strand 16	E	135	138	anti-parallel
Strand 17	E	142	148	anti-parallel
Strand 18	E	153	157	anti-parallel
Strand 19	E	162	164	anti-parallel
Strand 20	D	175	177	anti-parallel
Strand 21	D	135	138	anti-parallel
Strand 22	D	142	148	anti-parallel
Strand 23	D	153	157	anti-parallel
Strand 24	D	162	164	anti-parallel
Strand 25	C	175	177	anti-parallel
Strand 26	C	135	138	anti-parallel
Strand 27	C	142	148	anti-parallel
Strand 28	C	153	157	anti-parallel
Strand 29	C	162	164	anti-parallel
Strand 30	B	175	177	anti-parallel
Strand 31	B	135	138	anti-parallel
Strand 32	B	142	148	anti-parallel
Strand 33	B	153	157	anti-parallel
Strand 34	B	162	164	anti-parallel
Strand 35	A	175	177	anti-parallel
Strand 36	A	135	138	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	192	first strand
Strand 2	A	233	242	anti-parallel
Strand 3	A	222	228	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	B	272	276	parallel
Strand 3	C	272	278	parallel
Strand 4	D	272	276	parallel
Strand 5	E	272	276	parallel
Strand 6	F	272	276	parallel
Strand 7	G	272	276	parallel
Strand 8	A	272	276	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	192	first strand
Strand 2	B	233	242	anti-parallel
Strand 3	B	222	228	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	192	first strand
Strand 2	C	233	242	anti-parallel
Strand 3	C	222	228	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	192	first strand
Strand 2	D	233	242	anti-parallel
Strand 3	D	222	228	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	192	first strand
Strand 2	E	233	242	anti-parallel
Strand 3	E	222	228	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	192	first strand
Strand 2	F	233	242	anti-parallel
Strand 3	F	222	228	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	192	first strand
Strand 2	G	233	242	anti-parallel
Strand 3	G	222	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VYM