Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VZ4 entry

There are 14 chains in PDB entry 6VZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 38	ARG 135
B	ALA 16	GLY 102
C	ALA 13	LYS 119
D	ARG 34	ALA 125
E	ARG 41	ARG 135
F	ASP 25	GLY 103
G	ALA 13	LYS 119
H	ARG 34	ALA 125
I	T 2	A 147
J	T 1	A 146
K	ARG 316	GLN 1053
L	THR 2	ASP 466
M	PRO 3	PHE 467
N	MET 1	ARG 90

There are110 helices in PDB entry 6VZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	78	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	B	26	30	Right-handed 310
Helix 6	AA6	B	31	43	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	94	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	27	38	Right-handed alpha
Helix 11	AB2	C	47	74	Right-handed alpha
Helix 12	AB3	C	80	91	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	D	38	50	Right-handed alpha
Helix 15	AB6	D	56	85	Right-handed alpha
Helix 16	AB7	D	91	101	Right-handed alpha
Helix 17	AB8	D	104	125	Right-handed alpha
Helix 18	AB9	E	45	58	Right-handed alpha
Helix 19	AC1	E	64	77	Right-handed alpha
Helix 20	AC2	E	86	115	Right-handed alpha
Helix 21	AC3	E	121	133	Right-handed alpha
Helix 22	AC4	F	31	42	Right-handed alpha
Helix 23	AC5	F	50	77	Right-handed alpha
Helix 24	AC6	F	83	94	Right-handed alpha
Helix 25	AC7	G	17	23	Right-handed alpha
Helix 26	AC8	G	27	38	Right-handed alpha
Helix 27	AC9	G	47	74	Right-handed alpha
Helix 28	AD1	G	80	91	Right-handed alpha
Helix 29	AD2	G	91	98	Right-handed alpha
Helix 30	AD3	G	113	117	Right-handed 310
Helix 31	AD4	H	38	50	Right-handed alpha
Helix 32	AD5	H	56	85	Right-handed alpha
Helix 33	AD6	H	91	101	Right-handed alpha
Helix 34	AD7	H	104	125	Right-handed alpha
Helix 35	AD8	K	317	341	Right-handed alpha
Helix 36	AD9	K	343	384	Right-handed alpha
Helix 37	AE1	K	393	423	Right-handed alpha
Helix 38	AE2	K	447	452	Right-handed alpha
Helix 39	AE3	K	471	487	Right-handed alpha
Helix 40	AE4	K	500	516	Right-handed alpha
Helix 41	AE5	K	527	529	Right-handed 310
Helix 42	AE6	K	530	542	Right-handed alpha
Helix 43	AE7	K	553	564	Right-handed alpha
Helix 44	AE8	K	575	582	Right-handed alpha
Helix 45	AE9	K	582	587	Right-handed alpha
Helix 46	AF1	K	598	603	Right-handed 310
Helix 47	AF2	K	607	615	Right-handed alpha
Helix 48	AF3	K	634	645	Right-handed alpha
Helix 49	AF4	K	654	659	Right-handed alpha
Helix 50	AF5	K	679	691	Right-handed alpha
Helix 51	AF6	K	698	703	Right-handed alpha
Helix 52	AF7	K	719	733	Right-handed alpha
Helix 53	AF8	K	754	765	Right-handed alpha
Helix 54	AF9	K	766	768	Right-handed 310
Helix 55	AG1	K	769	777	Right-handed alpha
Helix 56	AG2	K	784	789	Right-handed alpha
Helix 57	AG3	K	790	806	Right-handed alpha
Helix 58	AG4	K	817	830	Right-handed alpha
Helix 59	AG5	K	842	855	Right-handed alpha
Helix 60	AG6	K	867	871	Right-handed alpha
Helix 61	AG7	K	891	900	Right-handed alpha
Helix 62	AG8	K	920	933	Right-handed alpha
Helix 63	AG9	K	933	943	Right-handed alpha
Helix 64	AH1	K	977	985	Right-handed alpha
Helix 65	AH2	K	988	1005	Right-handed alpha
Helix 66	AH3	K	1044	1052	Right-handed alpha
Helix 67	AH4	L	50	61	Right-handed alpha
Helix 68	AH5	L	79	94	Right-handed alpha
Helix 69	AH6	L	115	128	Right-handed alpha
Helix 70	AH7	L	141	149	Right-handed alpha
Helix 71	AH8	L	185	198	Right-handed alpha
Helix 72	AH9	L	199	201	Right-handed 310
Helix 73	AI1	L	215	226	Right-handed alpha
Helix 74	AI2	L	226	235	Right-handed alpha
Helix 75	AI3	L	242	256	Right-handed alpha
Helix 76	AI4	L	282	285	Right-handed 310
Helix 77	AI5	L	293	296	Right-handed 310
Helix 78	AI6	L	303	312	Right-handed alpha
Helix 79	AI7	L	313	314	Right-handed 310
Helix 80	AI8	L	315	319	Right-handed 310
Helix 81	AI9	L	324	327	Right-handed 310
Helix 82	AJ1	L	328	343	Right-handed alpha
Helix 83	AJ2	L	381	389	Right-handed alpha
Helix 84	AJ3	L	397	401	Right-handed 310
Helix 85	AJ4	L	403	416	Right-handed alpha
Helix 86	AJ5	L	428	434	Right-handed alpha
Helix 87	AJ6	L	434	445	Right-handed alpha
Helix 88	AJ7	L	448	452	Right-handed 310
Helix 89	AJ8	L	456	465	Right-handed alpha
Helix 90	AJ9	M	5	8	Right-handed 310
Helix 91	AK1	M	47	49	Right-handed 310
Helix 92	AK2	M	57	61	Right-handed 310
Helix 93	AK3	M	75	98	Right-handed alpha
Helix 94	AK4	M	100	104	Right-handed 310
Helix 95	AK5	M	120	134	Right-handed alpha
Helix 96	AK6	M	145	153	Right-handed alpha
Helix 97	AK7	M	190	202	Right-handed alpha
Helix 98	AK8	M	206	216	Right-handed alpha
Helix 99	AK9	M	275	279	Right-handed 310
Helix 100	AL1	M	295	300	Right-handed 310
Helix 101	AL2	M	302	318	Right-handed alpha
Helix 102	AL3	M	322	331	Right-handed alpha
Helix 103	AL4	M	337	342	Right-handed 310
Helix 104	AL5	M	344	358	Right-handed alpha
Helix 105	AL6	M	363	374	Right-handed alpha
Helix 106	AL7	M	416	423	Right-handed alpha
Helix 107	AL8	M	426	441	Right-handed alpha
Helix 108	AL9	M	450	458	Right-handed alpha
Helix 109	AM1	M	461	466	Right-handed alpha
Helix 110	AM2	N	2	10	Right-handed alpha

There are 23 sheets in PDB entry 6VZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	G	101	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	F	97	99	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	46	47	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	547	549	first strand
Strand 2	K	571	574	parallel
Strand 3	K	522	525	parallel
Strand 4	K	593	596	parallel
Strand 5	K	622	625	parallel
Strand 6	K	491	493	parallel
Strand 7	K	694	695	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	714	716	first strand
Strand 2	K	911	917	parallel
Strand 3	K	881	884	parallel
Strand 4	K	810	814	parallel
Strand 5	K	862	866	parallel
Strand 6	K	834	837	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	16	21	anti-parallel
Strand 3	L	8	12	anti-parallel
Strand 4	L	104	108	parallel
Strand 5	L	136	140	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	48	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	66	69	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	180	182	first strand
Strand 2	L	164	169	anti-parallel
Strand 3	L	154	159	anti-parallel
Strand 4	L	392	395	parallel
Strand 5	L	423	424	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	287	291	first strand
Strand 2	L	298	302	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	38	first strand
Strand 2	M	18	23	anti-parallel
Strand 3	M	10	13	anti-parallel
Strand 4	M	111	115	parallel
Strand 5	M	140	144	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	51	54	first strand
Strand 2	M	41	45	anti-parallel
Strand 3	M	63	65	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	68	69	first strand
Strand 2	M	72	73	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	179	first strand
Strand 2	M	169	175	anti-parallel
Strand 3	M	185	187	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	179	first strand
Strand 2	M	169	175	anti-parallel
Strand 3	M	159	164	anti-parallel
Strand 4	M	333	336	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	282	285	first strand
Strand 2	M	291	294	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	25	30	first strand
Strand 2	N	60	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZ4