Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VZG entry

There are 4 chains in PDB entry 6VZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	THR 2	ASP 466
M	PRO 3	PHE 467
K	ARG 316	ARG 377
N	MET 1	ARG 90

There are 46 helices in PDB entry 6VZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	50	61	Right-handed alpha
Helix 2	AA2	L	79	94	Right-handed alpha
Helix 3	AA3	L	115	128	Right-handed alpha
Helix 4	AA4	L	141	149	Right-handed alpha
Helix 5	AA5	L	185	198	Right-handed alpha
Helix 6	AA6	L	199	201	Right-handed 310
Helix 7	AA7	L	215	226	Right-handed alpha
Helix 8	AA8	L	226	235	Right-handed alpha
Helix 9	AA9	L	242	256	Right-handed alpha
Helix 10	AB1	L	282	285	Right-handed 310
Helix 11	AB2	L	293	296	Right-handed 310
Helix 12	AB3	L	303	312	Right-handed alpha
Helix 13	AB4	L	313	314	Right-handed 310
Helix 14	AB5	L	315	319	Right-handed 310
Helix 15	AB6	L	324	327	Right-handed 310
Helix 16	AB7	L	328	343	Right-handed alpha
Helix 17	AB8	L	381	389	Right-handed alpha
Helix 18	AB9	L	397	401	Right-handed 310
Helix 19	AC1	L	403	416	Right-handed alpha
Helix 20	AC2	L	428	434	Right-handed alpha
Helix 21	AC3	L	434	445	Right-handed alpha
Helix 22	AC4	L	448	452	Right-handed 310
Helix 23	AC5	L	456	465	Right-handed alpha
Helix 24	AC6	M	5	8	Right-handed 310
Helix 25	AC7	M	47	49	Right-handed 310
Helix 26	AC8	M	57	61	Right-handed 310
Helix 27	AC9	M	75	98	Right-handed alpha
Helix 28	AD1	M	100	104	Right-handed 310
Helix 29	AD2	M	120	134	Right-handed alpha
Helix 30	AD3	M	145	153	Right-handed alpha
Helix 31	AD4	M	190	202	Right-handed alpha
Helix 32	AD5	M	206	216	Right-handed alpha
Helix 33	AD6	M	275	279	Right-handed 310
Helix 34	AD7	M	295	300	Right-handed 310
Helix 35	AD8	M	302	318	Right-handed alpha
Helix 36	AD9	M	322	331	Right-handed alpha
Helix 37	AE1	M	337	342	Right-handed 310
Helix 38	AE2	M	344	358	Right-handed alpha
Helix 39	AE3	M	363	374	Right-handed alpha
Helix 40	AE4	M	416	423	Right-handed alpha
Helix 41	AE5	M	426	441	Right-handed alpha
Helix 42	AE6	M	450	458	Right-handed alpha
Helix 43	AE7	M	461	466	Right-handed alpha
Helix 44	AE8	K	317	341	Right-handed alpha
Helix 45	AE9	K	343	377	Right-handed alpha
Helix 46	AF1	N	2	10	Right-handed alpha

There are 11 sheets in PDB entry 6VZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	16	21	anti-parallel
Strand 3	L	8	12	anti-parallel
Strand 4	L	104	108	parallel
Strand 5	L	136	140	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	48	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	66	69	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	180	182	first strand
Strand 2	L	164	169	anti-parallel
Strand 3	L	154	159	anti-parallel
Strand 4	L	392	395	parallel
Strand 5	L	423	424	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	287	291	first strand
Strand 2	L	298	302	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	38	first strand
Strand 2	M	18	23	anti-parallel
Strand 3	M	10	13	anti-parallel
Strand 4	M	111	115	parallel
Strand 5	M	140	144	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	51	54	first strand
Strand 2	M	41	45	anti-parallel
Strand 3	M	63	65	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	68	69	first strand
Strand 2	M	72	73	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	179	first strand
Strand 2	M	169	175	anti-parallel
Strand 3	M	185	187	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	179	first strand
Strand 2	M	169	175	anti-parallel
Strand 3	M	159	164	anti-parallel
Strand 4	M	333	336	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	282	285	first strand
Strand 2	M	291	294	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	25	30	first strand
Strand 2	N	60	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZG