Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VZI entry

There are 6 chains in PDB entry 6VZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 518	LEU 663
D	GLN 1	THR 110
E	VAL 3	VAL 106
G	GLY 33	ARG 504
H	GLN 1	PRO 211
L	SER 6	THR 210

There are 21 helices in PDB entry 6VZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	522	526	Right-handed 310
Helix 2	AA2	B	529	535	Right-handed alpha
Helix 3	AA3	B	571	595	Right-handed alpha
Helix 4	AA4	B	627	635	Right-handed alpha
Helix 5	AA5	B	638	661	Right-handed alpha
Helix 6	AA6	E	79	83	Right-handed 310
Helix 7	AA7	G	98	116	Right-handed alpha
Helix 8	AA8	G	122	126	Right-handed 310
Helix 9	AA9	G	195	197	Right-handed 310
Helix 10	AB1	G	335	353	Right-handed alpha
Helix 11	AB2	G	368	373	Right-handed alpha
Helix 12	AB3	G	425	429	Right-handed 310
Helix 13	AB4	G	475	484	Right-handed alpha
Helix 14	AB5	H	28	32	Right-handed 310
Helix 15	AB6	H	63	65	Right-handed 310
Helix 16	AB7	H	73	75	Right-handed 310
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	H	154	156	Right-handed 310
Helix 19	AC1	L	79	83	Right-handed 310
Helix 20	AC2	L	122	128	Right-handed alpha
Helix 21	AC3	L	182	188	Right-handed alpha

There are 28 sheets in PDB entry 6VZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	74	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	88	94	anti-parallel
Strand 5	D	102	103	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	88	94	anti-parallel
Strand 5	D	107	108	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	23	24	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	21	first strand
Strand 2	E	71	76	anti-parallel
Strand 3	E	62	66	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	45	49	anti-parallel
Strand 3	E	35	38	anti-parallel
Strand 4	E	85	88	anti-parallel
Strand 5	E	102	103	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	85	first strand
Strand 2	G	243	245	anti-parallel
Strand 3	G	223	227	anti-parallel
Strand 4	G	486	490	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	94	first strand
Strand 2	G	236	240	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	441	451	anti-parallel
Strand 3	G	285	312	anti-parallel
Strand 4	G	315	322	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	273	first strand
Strand 2	G	285	312	anti-parallel
Strand 3	G	330	334	anti-parallel
Strand 4	G	413	421	anti-parallel
Strand 5	G	381	385	anti-parallel
Strand 6	G	374	378	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	454	456	first strand
Strand 2	G	468	470	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	68	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	108	109	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	89	100	anti-parallel
Strand 5	H	100	101	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	89	100	anti-parallel
Strand 5	H	105	106	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	122	first strand
Strand 2	H	133	143	anti-parallel
Strand 3	H	174	183	anti-parallel
Strand 4	H	161	168	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	192	197	anti-parallel
Strand 3	H	205	209	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	32	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	72	76	anti-parallel
Strand 3	L	62	63	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	146	first strand
Strand 2	L	192	198	anti-parallel
Strand 3	L	149	151	anti-parallel
Strand 4	L	154	156	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	146	first strand
Strand 2	L	192	198	anti-parallel
Strand 3	L	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZI