Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VZR entry

There are 4 chains in PDB entry 6VZR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 57	PHE 460
B	LYS 57	PHE 460
C	LYS 57	PHE 460
D	LYS 57	LEU 128

There are 66 helices in PDB entry 6VZR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	80	Right-handed alpha
Helix 2	AA2	A	100	105	Right-handed alpha
Helix 3	AA3	A	119	124	Right-handed alpha
Helix 4	AA4	A	124	139	Right-handed alpha
Helix 5	AA5	A	155	166	Right-handed alpha
Helix 6	AA6	A	189	193	Right-handed 310
Helix 7	AA7	A	257	262	Right-handed alpha
Helix 8	AA8	A	264	269	Right-handed alpha
Helix 9	AA9	A	286	296	Right-handed alpha
Helix 10	AB1	A	299	318	Right-handed alpha
Helix 11	AB2	A	318	330	Right-handed alpha
Helix 12	AB3	A	370	388	Right-handed alpha
Helix 13	AB4	A	389	393	Right-handed 310
Helix 14	AB5	A	394	411	Right-handed alpha
Helix 15	AB6	A	417	438	Right-handed alpha
Helix 16	AB7	A	452	460	Right-handed 310
Helix 17	AB8	B	69	80	Right-handed alpha
Helix 18	AB9	B	100	105	Right-handed alpha
Helix 19	AC1	B	119	124	Right-handed alpha
Helix 20	AC2	B	124	139	Right-handed alpha
Helix 21	AC3	B	155	166	Right-handed alpha
Helix 22	AC4	B	189	193	Right-handed 310
Helix 23	AC5	B	257	262	Right-handed alpha
Helix 24	AC6	B	264	269	Right-handed alpha
Helix 25	AC7	B	286	296	Right-handed alpha
Helix 26	AC8	B	299	318	Right-handed alpha
Helix 27	AC9	B	318	330	Right-handed alpha
Helix 28	AD1	B	370	388	Right-handed alpha
Helix 29	AD2	B	389	393	Right-handed 310
Helix 30	AD3	B	394	411	Right-handed alpha
Helix 31	AD4	B	415	438	Right-handed alpha
Helix 32	AD5	B	452	460	Right-handed 310
Helix 33	AD6	C	69	80	Right-handed alpha
Helix 34	AD7	C	100	106	Right-handed alpha
Helix 35	AD8	C	119	124	Right-handed alpha
Helix 36	AD9	C	124	139	Right-handed alpha
Helix 37	AE1	C	155	166	Right-handed alpha
Helix 38	AE2	C	189	193	Right-handed 310
Helix 39	AE3	C	257	262	Right-handed alpha
Helix 40	AE4	C	264	269	Right-handed alpha
Helix 41	AE5	C	286	296	Right-handed alpha
Helix 42	AE6	C	299	318	Right-handed alpha
Helix 43	AE7	C	318	330	Right-handed alpha
Helix 44	AE8	C	370	388	Right-handed alpha
Helix 45	AE9	C	389	393	Right-handed 310
Helix 46	AF1	C	394	411	Right-handed alpha
Helix 47	AF2	C	414	441	Right-handed alpha
Helix 48	AF3	C	452	460	Right-handed 310
Helix 49	AF4	D	69	80	Right-handed alpha
Helix 50	AF5	D	100	106	Right-handed alpha
Helix 51	AF6	D	119	124	Right-handed alpha
Helix 52	AF7	D	124	139	Right-handed alpha
Helix 53	AF8	D	155	166	Right-handed alpha
Helix 54	AF9	D	189	193	Right-handed 310
Helix 55	AG1	D	257	262	Right-handed alpha
Helix 56	AG2	D	264	269	Right-handed alpha
Helix 57	AG3	D	286	296	Right-handed alpha
Helix 58	AG4	D	299	318	Right-handed alpha
Helix 59	AG5	D	318	330	Right-handed alpha
Helix 60	AG6	D	370	388	Right-handed alpha
Helix 61	AG7	D	389	393	Right-handed 310
Helix 62	AG8	D	394	411	Right-handed alpha
Helix 63	AG9	D	414	438	Right-handed alpha
Helix 64	AH1	D	452	460	Right-handed 310
Helix 65	AH2	F	8	17	Right-handed alpha
Helix 66	AH3	G	8	16	Right-handed alpha

There are 16 sheets in PDB entry 6VZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	61	66	parallel
Strand 3	A	92	95	parallel
Strand 4	A	112	113	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	171	174	anti-parallel
Strand 4	A	185	187	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	214	226	anti-parallel
Strand 3	A	341	349	anti-parallel
Strand 4	A	355	361	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	239	242	anti-parallel
Strand 3	A	214	226	anti-parallel
Strand 4	A	231	235	anti-parallel
Strand 5	A	444	448	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	61	66	parallel
Strand 3	B	92	95	parallel
Strand 4	B	112	113	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	171	174	anti-parallel
Strand 4	B	185	187	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	214	226	anti-parallel
Strand 3	B	341	349	anti-parallel
Strand 4	B	355	361	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	239	242	anti-parallel
Strand 3	B	214	226	anti-parallel
Strand 4	B	231	235	anti-parallel
Strand 5	B	444	448	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	61	66	parallel
Strand 3	C	92	95	parallel
Strand 4	C	112	113	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	199	203	anti-parallel
Strand 3	C	171	174	anti-parallel
Strand 4	C	185	187	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	214	226	anti-parallel
Strand 3	C	341	349	anti-parallel
Strand 4	C	355	361	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	239	242	anti-parallel
Strand 3	C	214	226	anti-parallel
Strand 4	C	231	235	anti-parallel
Strand 5	C	444	448	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	61	66	parallel
Strand 3	D	92	95	parallel
Strand 4	D	112	113	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	152	first strand
Strand 2	D	199	203	anti-parallel
Strand 3	D	171	174	anti-parallel
Strand 4	D	185	187	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	214	226	anti-parallel
Strand 3	D	341	349	anti-parallel
Strand 4	D	355	361	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	239	242	anti-parallel
Strand 3	D	214	226	anti-parallel
Strand 4	D	231	235	anti-parallel
Strand 5	D	444	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VZR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZR