Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VZT entry

There are 3 chains in PDB entry 6VZT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 57PHE 460
B
 LYS 57PHE 460
D
 UNK 7UNK 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6VZT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 80Right-handed alpha
Helix 2
AA2
A
100 106Right-handed alpha
Helix 3
AA3
A
119 124Right-handed alpha
Helix 4
AA4
A
124 139Right-handed alpha
Helix 5
AA5
A
155 164Right-handed alpha
Helix 6
AA6
A
257 262Right-handed alpha
Helix 7
AA7
A
264 269Right-handed alpha
Helix 8
AA8
A
286 296Right-handed alpha
Helix 9
AA9
A
299 330Right-handed alpha
Helix 10
AB1
A
370 388Right-handed alpha
Helix 11
AB2
A
389 393Right-handed 310
Helix 12
AB3
A
394 412Right-handed alpha
Helix 13
AB4
A
415 440Right-handed alpha
Helix 14
AB5
A
452 460Right-handed 310
Helix 15
AB6
B
69 80Right-handed alpha
Helix 16
AB7
B
100 106Right-handed alpha
Helix 17
AB8
B
119 124Right-handed alpha
Helix 18
AB9
B
124 139Right-handed alpha
Helix 19
AC1
B
155 164Right-handed alpha
Helix 20
AC2
B
189 193Right-handed 310
Helix 21
AC3
B
257 262Right-handed alpha
Helix 22
AC4
B
264 269Right-handed alpha
Helix 23
AC5
B
286 296Right-handed alpha
Helix 24
AC6
B
299 330Right-handed alpha
Helix 25
AC7
B
370 388Right-handed alpha
Helix 26
AC8
B
389 393Right-handed 310
Helix 27
AC9
B
394 409Right-handed alpha
Helix 28
AD1
B
418 440Right-handed alpha
Helix 29
AD2
B
452 460Right-handed 310
Helix 30
AD3
D
8 17Right-handed alpha
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There are 8 sheets in PDB entry 6VZT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
61 63parallel
Strand 3
A
92 93parallel
Strand 4
A
112 113parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
171 175anti-parallel
Strand 4
A
185 187anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
239 242anti-parallel
Strand 3
A
216 226anti-parallel
Strand 4
A
341 349anti-parallel
Strand 5
A
355 361anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
239 242anti-parallel
Strand 3
A
216 226anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
444 448anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
61 63parallel
Strand 3
B
92 93parallel
Strand 4
B
112 113parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
171 175anti-parallel
Strand 4
B
185 187anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
239 242anti-parallel
Strand 3
B
216 226anti-parallel
Strand 4
B
341 349anti-parallel
Strand 5
B
355 361anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
239 242anti-parallel
Strand 3
B
216 226anti-parallel
Strand 4
B
231 235anti-parallel
Strand 5
B
444 448anti-parallel
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