Analysis of interatomic Contacts of Structural Units in PDB entry:
6W08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W08 entry

There are 2 chains in PDB entry 6W08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2PHE 358
B
 ASN 2TYR 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6W08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 32Right-handed alpha
Helix 2
AA2
A
42 64Right-handed alpha
Helix 3
AA3
A
70 101Right-handed alpha
Helix 4
AA4
A
103 116Right-handed alpha
Helix 5
AA5
A
117 160Right-handed alpha
Helix 6
AA6
A
163 191Right-handed alpha
Helix 7
AA7
A
230 252Right-handed alpha
Helix 8
AA8
A
256 264Right-handed alpha
Helix 9
AA9
A
265 268Right-handed 310
Helix 10
AB1
A
269 310Right-handed alpha
Helix 11
AB2
A
312 342Right-handed alpha
Helix 12
AB3
B
4 32Right-handed alpha
Helix 13
AB4
B
43 64Right-handed alpha
Helix 14
AB5
B
70 101Right-handed alpha
Helix 15
AB6
B
103 116Right-handed alpha
Helix 16
AB7
B
117 160Right-handed alpha
Helix 17
AB8
B
163 191Right-handed alpha
Helix 18
AB9
B
192 195Right-handed 310
Helix 19
AC1
B
230 252Right-handed alpha
Helix 20
AC2
B
256 264Right-handed alpha
Helix 21
AC3
B
265 267Right-handed 310
Helix 22
AC4
B
268 310Right-handed alpha
Helix 23
AC5
B
312 318Right-handed alpha
Helix 24
AC6
B
319 343Right-handed alpha
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There are 2 sheets in PDB entry 6W08. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
216 228anti-parallel
Strand 3
A
197 210anti-parallel
Strand 4
A
346 352parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
216 228anti-parallel
Strand 3
B
197 210anti-parallel
Strand 4
B
346 352parallel
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