Analysis of interatomic Contacts of Structural Units in PDB entry:
6W0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W0S entry

There are 2 chains in PDB entry 6W0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TRP 398
B
 THR 3TRP 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6W0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 24Right-handed alpha
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
95 104Right-handed alpha
Helix 6
AA6
A
104 128Right-handed alpha
Helix 7
AA7
A
135 139Right-handed alpha
Helix 8
AA8
A
139 152Right-handed alpha
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
178 202Right-handed alpha
Helix 11
AB2
A
207 215Right-handed alpha
Helix 12
AB3
A
223 256Right-handed alpha
Helix 13
AB4
A
256 266Right-handed alpha
Helix 14
AB5
A
269 281Right-handed alpha
Helix 15
AB6
A
312 318Right-handed alpha
Helix 16
AB7
A
343 347Right-handed 310
Helix 17
AB8
A
348 349Right-handed 310
Helix 18
AB9
A
350 367Right-handed alpha
Helix 19
AC1
A
376 380Right-handed 310
Helix 20
AC2
B
16 24Right-handed alpha
Helix 21
AC3
B
46 55Right-handed alpha
Helix 22
AC4
B
85 93Right-handed alpha
Helix 23
AC5
B
95 104Right-handed alpha
Helix 24
AC6
B
104 128Right-handed alpha
Helix 25
AC7
B
135 139Right-handed alpha
Helix 26
AC8
B
139 152Right-handed alpha
Helix 27
AC9
B
157 172Right-handed alpha
Helix 28
AD1
B
178 202Right-handed alpha
Helix 29
AD2
B
207 215Right-handed alpha
Helix 30
AD3
B
223 256Right-handed alpha
Helix 31
AD4
B
256 266Right-handed alpha
Helix 32
AD5
B
269 281Right-handed alpha
Helix 33
AD6
B
312 318Right-handed alpha
Helix 34
AD7
B
343 347Right-handed 310
Helix 35
AD8
B
348 349Right-handed 310
Helix 36
AD9
B
350 367Right-handed alpha
Helix 37
AE1
B
376 380Right-handed 310
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There are 6 sheets in PDB entry 6W0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
30 34parallel
Strand 3
A
40 44anti-parallel
Strand 4
A
308 311parallel
Strand 5
A
288 292anti-parallel
Strand 6
A
59 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
301 303anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
30 34parallel
Strand 3
B
40 44anti-parallel
Strand 4
B
308 311parallel
Strand 5
B
288 292anti-parallel
Strand 6
B
59 60anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
372 373anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 298first strand
Strand 2
B
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il