Analysis of interatomic Contacts of Structural Units in PDB entry:
6W0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W0W entry

There are 2 chains in PDB entry 6W0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3VAL 298
B
 GLY -2VAL 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6W0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
121 127Right-handed alpha
Helix 4
AA4
A
128 131Right-handed 310
Helix 5
AA5
A
142 159Right-handed alpha
Helix 6
AA6
A
160 165Right-handed 310
Helix 7
AA7
A
176 185Right-handed 310
Helix 8
AA8
A
192 199Right-handed alpha
Helix 9
AA9
A
203 212Right-handed alpha
Helix 10
AB1
A
213 215Right-handed 310
Helix 11
AB2
A
226 228Right-handed 310
Helix 12
AB3
A
255 270Right-handed alpha
Helix 13
AB4
A
273 290Right-handed alpha
Helix 14
AB5
B
41 53Right-handed alpha
Helix 15
AB6
B
66 79Right-handed alpha
Helix 16
AB7
B
121 126Right-handed alpha
Helix 17
AB8
B
127 128Right-handed 310
Helix 18
AB9
B
129 131Right-handed 310
Helix 19
AC1
B
142 159Right-handed alpha
Helix 20
AC2
B
160 165Right-handed 310
Helix 21
AC3
B
176 185Right-handed 310
Helix 22
AC4
B
192 199Right-handed alpha
Helix 23
AC5
B
203 212Right-handed alpha
Helix 24
AC6
B
213 215Right-handed 310
Helix 25
AC7
B
226 228Right-handed 310
Helix 26
AC8
B
255 270Right-handed alpha
Helix 27
AC9
B
273 290Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6W0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
5 9parallel
Strand 3
A
133 139parallel
Strand 4
A
167 172parallel
Strand 5
A
188 191parallel
Strand 6
A
220 224parallel
Strand 7
A
230 233anti-parallel
Strand 8
A
239 242anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
96 102parallel
Strand 4
A
108 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
B
108 112parallel
Strand 3
B
96 102anti-parallel
Strand 4
B
13 20parallel
Strand 5
B
34 40anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
87 88parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
5 9parallel
Strand 3
B
133 139parallel
Strand 4
B
167 172parallel
Strand 5
B
188 191parallel
Strand 6
B
220 224parallel
Strand 7
B
230 233anti-parallel
Strand 8
B
239 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
87 88parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il