Analysis of interatomic Contacts of Structural Units in PDB entry:
6W16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W16 entry

There are 3 chains in PDB entry 6W16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LEU 19	VAL 430
H	GLN 1	ASP 232
L	ASP 1	CYS 234

There are 18 helices in PDB entry 6W16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	65	88	Right-handed alpha
Helix 2	AA2	F	114	130	Right-handed alpha
Helix 3	AA3	F	130	141	Right-handed alpha
Helix 4	AA4	F	163	172	Right-handed alpha
Helix 5	AA5	F	172	177	Right-handed alpha
Helix 6	AA6	F	186	197	Right-handed alpha
Helix 7	AA7	F	197	209	Right-handed alpha
Helix 8	AA8	F	223	233	Right-handed alpha
Helix 9	AA9	F	237	247	Right-handed alpha
Helix 10	AB1	F	247	254	Right-handed alpha
Helix 11	AB2	F	338	340	Right-handed 310
Helix 12	AB3	H	29	37	Right-handed 310
Helix 13	AB4	H	69	72	Right-handed 310
Helix 14	AB5	H	95	99	Right-handed 310
Helix 15	AB6	H	216	219	Right-handed 310
Helix 16	AB7	L	95	99	Right-handed 310
Helix 17	AB8	L	141	146	Right-handed alpha
Helix 18	AB9	L	203	208	Right-handed alpha

There are 17 sheets in PDB entry 6W16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	24	first strand
Strand 2	F	29	40	anti-parallel
Strand 3	F	332	336	parallel
Strand 4	F	326	329	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	24	first strand
Strand 2	F	29	40	anti-parallel
Strand 3	F	278	288	anti-parallel
Strand 4	F	308	312	anti-parallel
Strand 5	F	317	320	anti-parallel
Strand 6	F	341	343	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	150	first strand
Strand 2	F	156	162	anti-parallel
Strand 3	F	44	51	parallel
Strand 4	F	266	273	anti-parallel
Strand 5	F	256	262	anti-parallel
Strand 6	F	213	214	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	295	first strand
Strand 2	F	298	300	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	303	304	first strand
Strand 2	F	363	364	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	376	first strand
Strand 2	F	379	383	anti-parallel
Strand 3	F	408	411	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	403	first strand
Strand 2	F	390	393	anti-parallel
Strand 3	F	417	420	anti-parallel
Strand 4	F	424	426	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	76	81	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	106	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	51	56	anti-parallel
Strand 6	H	65	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	150	160	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	150	160	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	184	185	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	169	first strand
Strand 2	H	210	215	anti-parallel
Strand 3	H	220	225	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	76	83	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	101	106	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	55	anti-parallel
Strand 6	L	66	67	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	101	106	anti-parallel
Strand 4	L	117	118	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	134	138	first strand
Strand 2	L	149	159	anti-parallel
Strand 3	L	193	202	anti-parallel
Strand 4	L	179	183	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	165	170	first strand
Strand 2	L	212	217	anti-parallel
Strand 3	L	225	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W16

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W16