Analysis of interatomic Contacts of Structural Units in PDB entry:
6W1I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W1I entry

There are 4 chains in PDB entry 6W1I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	GLN 190
B	ASN -1	VAL 192
C	ASN -1	GLN 190
D	SER -2	GLU 191

There are 28 helices in PDB entry 6W1I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	12	Right-handed alpha
Helix 2	AA2	A	31	46	Right-handed alpha
Helix 3	AA3	A	61	73	Right-handed alpha
Helix 4	AA4	A	112	114	Right-handed 310
Helix 5	AA5	A	130	143	Right-handed alpha
Helix 6	AA6	A	160	168	Right-handed alpha
Helix 7	AA7	A	181	185	Right-handed 310
Helix 8	AA8	B	0	12	Right-handed alpha
Helix 9	AA9	B	31	46	Right-handed alpha
Helix 10	AB1	B	61	73	Right-handed alpha
Helix 11	AB2	B	112	114	Right-handed 310
Helix 12	AB3	B	130	143	Right-handed alpha
Helix 13	AB4	B	160	168	Right-handed alpha
Helix 14	AB5	B	181	185	Right-handed 310
Helix 15	AB6	C	0	12	Right-handed alpha
Helix 16	AB7	C	31	47	Right-handed alpha
Helix 17	AB8	C	61	73	Right-handed alpha
Helix 18	AB9	C	112	114	Right-handed 310
Helix 19	AC1	C	130	143	Right-handed alpha
Helix 20	AC2	C	160	168	Right-handed alpha
Helix 21	AC3	C	181	185	Right-handed 310
Helix 22	AC4	D	-1	12	Right-handed alpha
Helix 23	AC5	D	31	46	Right-handed alpha
Helix 24	AC6	D	61	73	Right-handed alpha
Helix 25	AC7	D	112	114	Right-handed 310
Helix 26	AC8	D	130	143	Right-handed alpha
Helix 27	AC9	D	160	168	Right-handed alpha
Helix 28	AD1	D	181	185	Right-handed 310

There are 12 sheets in PDB entry 6W1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	19	21	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	B	76	79	anti-parallel
Strand 3	B	53	57	parallel
Strand 4	B	119	127	parallel
Strand 5	B	146	156	parallel
Strand 6	B	172	180	parallel
Strand 7	B	187	188	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	172	180	anti-parallel
Strand 3	A	146	156	parallel
Strand 4	A	119	127	parallel
Strand 5	A	53	57	parallel
Strand 6	A	76	79	parallel
Strand 7	B	29	30	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	98	first strand
Strand 2	A	103	110	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	20	21	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	98	first strand
Strand 2	B	103	110	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	19	21	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	D	76	79	anti-parallel
Strand 3	D	53	57	parallel
Strand 4	D	119	127	parallel
Strand 5	D	146	156	parallel
Strand 6	D	172	180	parallel
Strand 7	D	187	188	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	172	180	anti-parallel
Strand 3	C	146	156	parallel
Strand 4	C	119	127	parallel
Strand 5	C	53	57	parallel
Strand 6	C	76	79	parallel
Strand 7	D	29	30	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	97	first strand
Strand 2	C	104	110	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	19	21	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	97	first strand
Strand 2	D	104	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W1I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W1I