Analysis of interatomic Contacts of Structural Units in PDB entry:
6W1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W1Y entry

There are 5 chains in PDB entry 6W1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	SER 462
B	THR 7	SER 462
C	THR 7	SER 462
D	THR 7	SER 462
E	THR 7	SER 462

There are 45 helices in PDB entry 6W1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	91	93	Right-handed 310
Helix 3	AA3	A	170	176	Right-handed alpha
Helix 4	AA4	A	220	224	Right-handed 310
Helix 5	AA5	A	228	242	Right-handed alpha
Helix 6	AA6	A	249	271	Right-handed alpha
Helix 7	AA7	A	284	308	Right-handed alpha
Helix 8	AA8	A	327	332	Right-handed alpha
Helix 9	AA9	A	398	461	Right-handed alpha
Helix 10	AB1	B	12	20	Right-handed alpha
Helix 11	AB2	B	91	93	Right-handed 310
Helix 12	AB3	B	170	176	Right-handed alpha
Helix 13	AB4	B	220	224	Right-handed 310
Helix 14	AB5	B	228	242	Right-handed alpha
Helix 15	AB6	B	249	271	Right-handed alpha
Helix 16	AB7	B	284	308	Right-handed alpha
Helix 17	AB8	B	327	332	Right-handed alpha
Helix 18	AB9	B	398	461	Right-handed alpha
Helix 19	AC1	C	12	20	Right-handed alpha
Helix 20	AC2	C	91	93	Right-handed 310
Helix 21	AC3	C	170	176	Right-handed alpha
Helix 22	AC4	C	220	224	Right-handed 310
Helix 23	AC5	C	228	242	Right-handed alpha
Helix 24	AC6	C	249	271	Right-handed alpha
Helix 25	AC7	C	284	308	Right-handed alpha
Helix 26	AC8	C	327	332	Right-handed alpha
Helix 27	AC9	C	398	461	Right-handed alpha
Helix 28	AD1	D	12	20	Right-handed alpha
Helix 29	AD2	D	91	93	Right-handed 310
Helix 30	AD3	D	170	176	Right-handed alpha
Helix 31	AD4	D	220	224	Right-handed 310
Helix 32	AD5	D	228	242	Right-handed alpha
Helix 33	AD6	D	249	271	Right-handed alpha
Helix 34	AD7	D	284	308	Right-handed alpha
Helix 35	AD8	D	327	332	Right-handed alpha
Helix 36	AD9	D	398	461	Right-handed alpha
Helix 37	AE1	E	12	20	Right-handed alpha
Helix 38	AE2	E	91	93	Right-handed 310
Helix 39	AE3	E	170	176	Right-handed alpha
Helix 40	AE4	E	220	224	Right-handed 310
Helix 41	AE5	E	228	242	Right-handed alpha
Helix 42	AE6	E	249	271	Right-handed alpha
Helix 43	AE7	E	284	308	Right-handed alpha
Helix 44	AE8	E	327	332	Right-handed alpha
Helix 45	AE9	E	398	461	Right-handed alpha

There are 10 sheets in PDB entry 6W1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	114	117	anti-parallel
Strand 3	A	123	133	anti-parallel
Strand 4	A	57	68	anti-parallel
Strand 5	A	37	52	anti-parallel
Strand 6	A	163	167	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	205	218	anti-parallel
Strand 4	A	187	202	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	114	117	anti-parallel
Strand 3	B	123	133	anti-parallel
Strand 4	B	57	68	anti-parallel
Strand 5	B	37	52	anti-parallel
Strand 6	B	163	167	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	146	155	anti-parallel
Strand 3	B	205	218	anti-parallel
Strand 4	B	187	202	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	114	117	anti-parallel
Strand 3	C	123	133	anti-parallel
Strand 4	C	57	68	anti-parallel
Strand 5	C	37	52	anti-parallel
Strand 6	C	163	167	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	146	155	anti-parallel
Strand 3	C	205	218	anti-parallel
Strand 4	C	187	202	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	114	117	anti-parallel
Strand 3	D	123	133	anti-parallel
Strand 4	D	57	68	anti-parallel
Strand 5	D	37	52	anti-parallel
Strand 6	D	163	167	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	146	155	anti-parallel
Strand 3	D	205	218	anti-parallel
Strand 4	D	187	202	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	114	117	anti-parallel
Strand 3	E	123	133	anti-parallel
Strand 4	E	57	68	anti-parallel
Strand 5	E	37	52	anti-parallel
Strand 6	E	163	167	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	146	155	anti-parallel
Strand 3	E	205	218	anti-parallel
Strand 4	E	187	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W1Y