Analysis of interatomic Contacts of Structural Units in PDB entry:
6W2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W2B entry

There are 3 chains in PDB entry 6W2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 74PRO 617
B
 GLU 20PRO 237
C
 ASP 21CYS 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 6W2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 97Right-handed alpha
Helix 2
AA2
A
98 112Right-handed alpha
Helix 3
AA3
A
113 116Right-handed 310
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
128 144Right-handed alpha
Helix 6
AA6
A
148 153Right-handed alpha
Helix 7
AA7
A
155 158Right-handed 310
Helix 8
AA8
A
159 189Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
238 242Right-handed 310
Helix 11
AB2
A
252 271Right-handed alpha
Helix 12
AB3
A
273 285Right-handed alpha
Helix 13
AB4
A
286 301Right-handed alpha
Helix 14
AB5
A
305 314Right-handed alpha
Helix 15
AB6
A
316 321Right-handed 310
Helix 16
AB7
A
322 338Right-handed alpha
Helix 17
AB8
A
342 350Right-handed alpha
Helix 18
AB9
A
357 390Right-handed alpha
Helix 19
AC1
A
395 399Right-handed 310
Helix 20
AC2
A
402 408Right-handed alpha
Helix 21
AC3
A
408 416Right-handed alpha
Helix 22
AC4
A
419 454Right-handed alpha
Helix 23
AC5
A
461 478Right-handed alpha
Helix 24
AC6
A
484 495Right-handed alpha
Helix 25
AC7
A
496 514Right-handed alpha
Helix 26
AC8
A
517 529Right-handed alpha
Helix 27
AC9
A
534 543Right-handed alpha
Helix 28
AD1
A
543 559Right-handed alpha
Helix 29
AD2
A
573 584Right-handed alpha
Helix 30
AD3
A
587 600Right-handed alpha
Helix 31
AD4
A
603 613Right-handed alpha
Helix 32
AD5
B
47 51Right-handed 310
Helix 33
AD6
B
211 213Right-handed 310
Helix 34
AD7
C
99 103Right-handed 310
Helix 35
AD8
C
141 148Right-handed alpha
Helix 36
AD9
C
203 207Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6W2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
41 44anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
132 136parallel
Strand 3
B
112 118anti-parallel
Strand 4
B
52 58anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
97 102anti-parallel
Strand 3
B
87 92anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
160 170anti-parallel
Strand 3
B
199 209anti-parallel
Strand 4
B
188 196anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
219 224anti-parallel
Strand 3
B
229 234anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 34first strand
Strand 2
C
122 127parallel
Strand 3
C
105 110anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
C
65 69anti-parallel
Strand 6
C
73 74anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 44first strand
Strand 2
C
90 95anti-parallel
Strand 3
C
82 85anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 138first strand
Strand 2
C
149 159anti-parallel
Strand 3
C
193 202anti-parallel
Strand 4
C
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 175first strand
Strand 2
C
165 169anti-parallel
Strand 3
C
212 217anti-parallel
Strand 4
C
225 229anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il