Analysis of interatomic Contacts of Structural Units in PDB entry:
6W2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W2J entry

There are 2 chains in PDB entry 6W2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 43	ALA 1496
B	ALA 43	ALA 1496

There are104 helices in PDB entry 6W2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	85	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	148	156	Right-handed alpha
Helix 4	AA4	A	165	174	Right-handed alpha
Helix 5	AA5	A	194	198	Right-handed 310
Helix 6	AA6	A	199	205	Right-handed alpha
Helix 7	AA7	A	228	238	Right-handed alpha
Helix 8	AA8	A	267	270	Right-handed 310
Helix 9	AA9	A	271	284	Right-handed alpha
Helix 10	AB1	A	295	304	Right-handed alpha
Helix 11	AB2	A	326	328	Right-handed 310
Helix 12	AB3	A	388	401	Right-handed alpha
Helix 13	AB4	A	406	410	Right-handed 310
Helix 14	AB5	A	444	455	Right-handed alpha
Helix 15	AB6	A	468	472	Right-handed 310
Helix 16	AB7	A	488	500	Right-handed alpha
Helix 17	AB8	A	509	523	Right-handed alpha
Helix 18	AB9	A	524	530	Right-handed alpha
Helix 19	AC1	A	537	546	Right-handed alpha
Helix 20	AC2	A	546	556	Right-handed alpha
Helix 21	AC3	A	569	581	Right-handed alpha
Helix 22	AC4	A	602	615	Right-handed alpha
Helix 23	AC5	A	673	692	Right-handed alpha
Helix 24	AC6	A	720	731	Right-handed alpha
Helix 25	AC7	A	733	743	Right-handed alpha
Helix 26	AC8	A	746	750	Right-handed 310
Helix 27	AC9	A	804	817	Right-handed alpha
Helix 28	AD1	A	827	831	Right-handed 310
Helix 29	AD2	A	838	845	Right-handed alpha
Helix 30	AD3	A	849	860	Right-handed alpha
Helix 31	AD4	A	863	872	Right-handed alpha
Helix 32	AD5	A	874	893	Right-handed alpha
Helix 33	AD6	A	900	910	Right-handed alpha
Helix 34	AD7	A	913	922	Right-handed alpha
Helix 35	AD8	A	924	935	Right-handed alpha
Helix 36	AD9	A	990	1006	Right-handed alpha
Helix 37	AE1	A	1036	1048	Right-handed alpha
Helix 38	AE2	A	1058	1064	Right-handed alpha
Helix 39	AE3	A	1064	1071	Right-handed alpha
Helix 40	AE4	A	1079	1087	Right-handed alpha
Helix 41	AE5	A	1088	1099	Right-handed alpha
Helix 42	AE6	A	1111	1123	Right-handed alpha
Helix 43	AE7	A	1145	1150	Right-handed alpha
Helix 44	AE8	A	1216	1234	Right-handed alpha
Helix 45	AE9	A	1263	1272	Right-handed alpha
Helix 46	AF1	A	1274	1285	Right-handed alpha
Helix 47	AF2	A	1341	1353	Right-handed alpha
Helix 48	AF3	A	1367	1369	Right-handed 310
Helix 49	AF4	A	1370	1384	Right-handed alpha
Helix 50	AF5	A	1392	1401	Right-handed alpha
Helix 51	AF6	A	1423	1429	Right-handed alpha
Helix 52	AF7	A	1442	1444	Right-handed 310
Helix 53	AF8	A	1445	1460	Right-handed alpha
Helix 54	AF9	A	1466	1480	Right-handed alpha
Helix 55	AG1	B	79	85	Right-handed alpha
Helix 56	AG2	B	86	90	Right-handed 310
Helix 57	AG3	B	148	156	Right-handed alpha
Helix 58	AG4	B	165	174	Right-handed alpha
Helix 59	AG5	B	194	198	Right-handed 310
Helix 60	AG6	B	199	205	Right-handed alpha
Helix 61	AG7	B	228	238	Right-handed alpha
Helix 62	AG8	B	267	270	Right-handed 310
Helix 63	AG9	B	271	284	Right-handed alpha
Helix 64	AH1	B	295	304	Right-handed alpha
Helix 65	AH2	B	388	401	Right-handed alpha
Helix 66	AH3	B	405	409	Right-handed 310
Helix 67	AH4	B	444	455	Right-handed alpha
Helix 68	AH5	B	468	472	Right-handed 310
Helix 69	AH6	B	488	500	Right-handed alpha
Helix 70	AH7	B	509	523	Right-handed alpha
Helix 71	AH8	B	524	529	Right-handed alpha
Helix 72	AH9	B	537	546	Right-handed alpha
Helix 73	AI1	B	546	556	Right-handed alpha
Helix 74	AI2	B	673	692	Right-handed alpha
Helix 75	AI3	B	720	731	Right-handed alpha
Helix 76	AI4	B	733	743	Right-handed alpha
Helix 77	AI5	B	746	750	Right-handed 310
Helix 78	AI6	B	804	817	Right-handed alpha
Helix 79	AI7	B	838	845	Right-handed alpha
Helix 80	AI8	B	849	860	Right-handed alpha
Helix 81	AI9	B	863	872	Right-handed alpha
Helix 82	AJ1	B	874	893	Right-handed alpha
Helix 83	AJ2	B	900	910	Right-handed alpha
Helix 84	AJ3	B	913	922	Right-handed alpha
Helix 85	AJ4	B	924	935	Right-handed alpha
Helix 86	AJ5	B	990	1006	Right-handed alpha
Helix 87	AJ6	B	1036	1048	Right-handed alpha
Helix 88	AJ7	B	1058	1063	Right-handed alpha
Helix 89	AJ8	B	1064	1071	Right-handed alpha
Helix 90	AJ9	B	1079	1087	Right-handed alpha
Helix 91	AK1	B	1088	1099	Right-handed alpha
Helix 92	AK2	B	1111	1123	Right-handed alpha
Helix 93	AK3	B	1147	1152	Right-handed alpha
Helix 94	AK4	B	1216	1234	Right-handed alpha
Helix 95	AK5	B	1263	1272	Right-handed alpha
Helix 96	AK6	B	1274	1284	Right-handed alpha
Helix 97	AK7	B	1341	1353	Right-handed alpha
Helix 98	AK8	B	1367	1369	Right-handed 310
Helix 99	AK9	B	1370	1384	Right-handed alpha
Helix 100	AL1	B	1392	1401	Right-handed alpha
Helix 101	AL2	B	1410	1414	Right-handed 310
Helix 102	AL3	B	1422	1429	Right-handed alpha
Helix 103	AL4	B	1445	1460	Right-handed alpha
Helix 104	AL5	B	1466	1480	Right-handed alpha

There are 25 sheets in PDB entry 6W2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	55	60	anti-parallel
Strand 3	A	160	162	anti-parallel
Strand 4	A	130	132	parallel
Strand 5	A	92	96	parallel
Strand 6	A	67	74	parallel
Strand 7	A	180	184	anti-parallel
Strand 8	A	45	50	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	135	136	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	218	225	parallel
Strand 4	A	258	263	parallel
Strand 5	A	290	294	parallel
Strand 6	A	371	374	parallel
Strand 7	A	363	366	anti-parallel
Strand 8	A	349	351	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	341	first strand
Strand 2	A	308	324	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	458	462	parallel
Strand 3	A	424	428	parallel
Strand 4	A	503	505	parallel
Strand 5	A	532	533	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	567	first strand
Strand 2	A	620	624	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	599	600	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	716	first strand
Strand 2	A	695	703	anti-parallel
Strand 3	A	630	638	anti-parallel
Strand 4	A	644	654	anti-parallel
Strand 5	A	664	667	anti-parallel
Strand 6	A	769	776	anti-parallel
Strand 7	A	794	802	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	940	943	first strand
Strand 2	A	957	961	anti-parallel
Strand 3	A	1029	1032	parallel
Strand 4	A	1010	1014	parallel
Strand 5	A	976	979	parallel
Strand 6	A	1051	1053	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1109	first strand
Strand 2	A	1164	1167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1126	1128	first strand
Strand 2	A	1140	1142	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1250	1257	first strand
Strand 2	A	1238	1247	anti-parallel
Strand 3	A	1174	1183	anti-parallel
Strand 4	A	1186	1195	anti-parallel
Strand 5	A	1208	1210	anti-parallel
Strand 6	A	1306	1310	anti-parallel
Strand 7	A	1335	1339	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1313	1319	first strand
Strand 2	A	1326	1332	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1421	1422	first strand
Strand 2	A	1405	1409	parallel
Strand 3	A	1387	1391	parallel
Strand 4	A	1361	1365	parallel
Strand 5	A	1435	1437	parallel
Strand 6	A	1463	1464	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	55	60	anti-parallel
Strand 3	B	160	162	anti-parallel
Strand 4	B	130	132	parallel
Strand 5	B	92	96	parallel
Strand 6	B	67	74	parallel
Strand 7	B	179	184	anti-parallel
Strand 8	B	45	50	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	135	136	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	145	147	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	218	225	parallel
Strand 4	B	258	263	parallel
Strand 5	B	290	294	parallel
Strand 6	B	371	374	parallel
Strand 7	B	363	366	anti-parallel
Strand 8	B	349	351	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	341	first strand
Strand 2	B	308	324	anti-parallel
Strand 3	B	353	355	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	483	first strand
Strand 2	B	458	462	parallel
Strand 3	B	424	428	parallel
Strand 4	B	503	505	parallel
Strand 5	B	532	533	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	716	first strand
Strand 2	B	695	703	anti-parallel
Strand 3	B	630	638	anti-parallel
Strand 4	B	644	654	anti-parallel
Strand 5	B	664	667	anti-parallel
Strand 6	B	769	776	anti-parallel
Strand 7	B	794	802	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	940	943	first strand
Strand 2	B	957	961	anti-parallel
Strand 3	B	1030	1032	parallel
Strand 4	B	1010	1014	parallel
Strand 5	B	976	979	parallel
Strand 6	B	1051	1053	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1109	first strand
Strand 2	B	1164	1168	anti-parallel
Strand 3	B	1126	1127	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1250	1257	first strand
Strand 2	B	1238	1247	anti-parallel
Strand 3	B	1174	1183	anti-parallel
Strand 4	B	1186	1195	anti-parallel
Strand 5	B	1208	1210	anti-parallel
Strand 6	B	1306	1310	anti-parallel
Strand 7	B	1335	1339	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1313	1317	first strand
Strand 2	B	1328	1332	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1408	first strand
Strand 2	B	1387	1391	parallel
Strand 3	B	1361	1365	parallel
Strand 4	B	1434	1437	parallel
Strand 5	B	1463	1464	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W2J