Analysis of interatomic Contacts of Structural Units in PDB entry:
6W2O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W2O entry

There is 1 chain in PDB entry 6W2O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 3ARG 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6W2O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
46 52Right-handed alpha
Helix 4
AA4
A
53 63Right-handed alpha
Helix 5
AA5
A
64 67Right-handed 310
Helix 6
AA6
A
80 86Right-handed alpha
Helix 7
AA7
A
106 113Right-handed alpha
Helix 8
AA8
A
117 122Right-handed alpha
Helix 9
AA9
A
122 137Right-handed alpha
Helix 10
AB1
A
148 159Right-handed alpha
Helix 11
AB2
A
165 175Right-handed alpha
Helix 12
AB3
A
175 201Right-handed alpha
Helix 13
AB4
A
211 215Right-handed 310
Helix 14
AB5
A
216 224Right-handed alpha
Helix 15
AB6
A
224 235Right-handed alpha
Helix 16
AB7
A
239 243Right-handed 310
Helix 17
AB8
A
253 255Right-handed 310
Helix 18
AB9
A
256 262Right-handed alpha
Helix 19
AC1
A
275 284Right-handed alpha
Helix 20
AC2
A
294 300Right-handed 310
Helix 21
AC3
A
301 319Right-handed alpha
Helix 22
AC4
A
340 355Right-handed alpha
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There are 2 sheets in PDB entry 6W2O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 74first strand
Strand 2
A
142 147parallel
Strand 3
A
204 208parallel
Strand 4
A
246 249parallel
Strand 5
A
267 269parallel
Strand 6
A
288 290parallel
Strand 7
A
327 328parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 92first strand
Strand 2
A
98 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il