Analysis of interatomic Contacts of Structural Units in PDB entry:
6W33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W33 entry

There are 4 chains in PDB entry 6W33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 51ALA 94
A
 THR 96LEU 311
B
 LYS 51ALA 94
B
 THR 96LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6W33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
96 109Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
121 125Right-handed 310
Helix 5
AA5
A
131 135Right-handed 310
Helix 6
AA6
A
142 153Right-handed alpha
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
166 178Right-handed alpha
Helix 9
AA9
A
190 194Right-handed 310
Helix 10
AB1
A
205 218Right-handed alpha
Helix 11
AB2
A
223 235Right-handed alpha
Helix 12
AB3
A
237 241Right-handed 310
Helix 13
AB4
A
243 248Right-handed 310
Helix 14
AB5
A
296 311Right-handed alpha
Helix 15
AB6
B
52 67Right-handed alpha
Helix 16
AB7
B
96 109Right-handed alpha
Helix 17
AB8
B
111 115Right-handed 310
Helix 18
AB9
B
121 125Right-handed 310
Helix 19
AC1
B
131 136Right-handed 310
Helix 20
AC2
B
142 153Right-handed alpha
Helix 21
AC3
B
154 165Right-handed alpha
Helix 22
AC4
B
166 177Right-handed alpha
Helix 23
AC5
B
190 194Right-handed 310
Helix 24
AC6
B
205 218Right-handed alpha
Helix 25
AC7
B
223 235Right-handed alpha
Helix 26
AC8
B
237 241Right-handed 310
Helix 27
AC9
B
243 248Right-handed 310
Helix 28
AD1
B
296 311Right-handed alpha
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There are 6 sheets in PDB entry 6W33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
280 287anti-parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
253 261anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
140 141anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
280 287anti-parallel
Strand 4
B
266 273anti-parallel
Strand 5
B
253 260anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
203 204anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
140 141anti-parallel
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