Analysis of interatomic Contacts of Structural Units in PDB entry:
6W38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W38 entry

There are 2 chains in PDB entry 6W38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12GLU 343
B
 THR 586PRO 807
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6W38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
48 63Right-handed alpha
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
101 118Right-handed alpha
Helix 5
AA5
A
130 139Right-handed alpha
Helix 6
AA6
A
179 182Right-handed 310
Helix 7
AA7
A
188 194Right-handed alpha
Helix 8
AA8
A
218 228Right-handed alpha
Helix 9
AA9
A
235 239Right-handed 310
Helix 10
AB1
A
240 241Right-handed 310
Helix 11
AB2
A
242 253Right-handed alpha
Helix 12
AB3
A
259 278Right-handed alpha
Helix 13
AB4
A
280 296Right-handed alpha
Helix 14
AB5
A
299 318Right-handed alpha
Helix 15
AB6
A
319 321Right-handed 310
Helix 16
AB7
A
322 341Right-handed alpha
Helix 17
AB8
B
586 590Right-handed 310
Helix 18
AB9
B
676 678Right-handed 310
Helix 19
AC1
B
679 698Right-handed alpha
Helix 20
AC2
B
754 759Right-handed alpha
Helix 21
AC3
B
762 793Right-handed alpha
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There are 4 sheets in PDB entry 6W38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
211 214anti-parallel
Strand 3
A
184 187anti-parallel
Strand 4
A
66 71anti-parallel
Strand 5
A
90 97anti-parallel
Strand 6
A
164 172parallel
Strand 7
A
151 156anti-parallel
Strand 8
A
142 146anti-parallel
Strand 9
B
670 674parallel
Strand 10
B
645 649anti-parallel
Strand 11
B
630 639anti-parallel
Strand 12
B
619 627anti-parallel
Strand 13
B
609 613anti-parallel
Strand 14
B
602 605anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
44 47anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
256 257parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
749 750first strand
Strand 2
B
740 743anti-parallel
Strand 3
B
732 735anti-parallel
Strand 4
B
723 727anti-parallel
Strand 5
B
710 715anti-parallel
Strand 6
B
701 706anti-parallel
Strand 7
B
801 803parallel
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