Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W3C entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 13 chains in PDB entry 6W3C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 560	HIS 723
A	PHE 725	PHE 725
A	ARG 727	ARG 728
A	GLY 730	GLU 964
B	GLU 560	HIS 723
B	PHE 725	PHE 725
B	ARG 727	ARG 728
B	GLY 730	HIS 963
C	GLU 560	HIS 723
C	PHE 725	PHE 725
C	ARG 727	ARG 728
C	GLY 730	HIS 963
D	GLU 560	GLY 580

There are 97 helices in PDB entry 6W3C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	602	604	Right-handed 310
Helix 2	AA2	A	605	620	Right-handed alpha
Helix 3	AA3	A	649	655	Right-handed alpha
Helix 4	AA4	A	664	682	Right-handed alpha
Helix 5	AA5	A	739	743	Right-handed 310
Helix 6	AA6	A	753	769	Right-handed alpha
Helix 7	AA7	A	777	779	Right-handed 310
Helix 8	AA8	A	780	788	Right-handed alpha
Helix 9	AA9	A	799	813	Right-handed alpha
Helix 10	AB1	A	816	820	Right-handed 310
Helix 11	AB2	A	822	828	Right-handed alpha
Helix 12	AB3	A	829	833	Right-handed 310
Helix 13	AB4	A	834	849	Right-handed alpha
Helix 14	AB5	A	856	864	Right-handed alpha
Helix 15	AB6	A	865	870	Right-handed alpha
Helix 16	AB7	A	873	877	Right-handed 310
Helix 17	AB8	A	879	887	Right-handed alpha
Helix 18	AB9	A	896	910	Right-handed alpha
Helix 19	AC1	A	911	914	Right-handed 310
Helix 20	AC2	A	915	923	Right-handed alpha
Helix 21	AC3	A	926	937	Right-handed alpha
Helix 22	AC4	A	939	948	Right-handed alpha
Helix 23	AC5	A	949	952	Right-handed 310
Helix 24	AC6	B	581	583	Right-handed 310
Helix 25	AC7	B	602	604	Right-handed 310
Helix 26	AC8	B	605	620	Right-handed alpha
Helix 27	AC9	B	649	655	Right-handed alpha
Helix 28	AD1	B	664	682	Right-handed alpha
Helix 29	AD2	B	739	744	Right-handed 310
Helix 30	AD3	B	753	769	Right-handed alpha
Helix 31	AD4	B	780	788	Right-handed alpha
Helix 32	AD5	B	799	813	Right-handed alpha
Helix 33	AD6	B	816	820	Right-handed 310
Helix 34	AD7	B	822	828	Right-handed alpha
Helix 35	AD8	B	829	833	Right-handed 310
Helix 36	AD9	B	834	849	Right-handed alpha
Helix 37	AE1	B	856	864	Right-handed alpha
Helix 38	AE2	B	865	871	Right-handed alpha
Helix 39	AE3	B	873	877	Right-handed 310
Helix 40	AE4	B	879	887	Right-handed alpha
Helix 41	AE5	B	896	910	Right-handed alpha
Helix 42	AE6	B	911	914	Right-handed 310
Helix 43	AE7	B	915	923	Right-handed alpha
Helix 44	AE8	B	926	935	Right-handed alpha
Helix 45	AE9	B	939	948	Right-handed alpha
Helix 46	AF1	B	949	952	Right-handed 310
Helix 47	AF2	B	954	958	Right-handed 310
Helix 48	AF3	C	602	604	Right-handed 310
Helix 49	AF4	C	605	620	Right-handed alpha
Helix 50	AF5	C	649	655	Right-handed alpha
Helix 51	AF6	C	664	682	Right-handed alpha
Helix 52	AF7	C	726	730	Right-handed 310
Helix 53	AF8	C	739	743	Right-handed 310
Helix 54	AF9	C	753	769	Right-handed alpha
Helix 55	AG1	C	777	779	Right-handed 310
Helix 56	AG2	C	780	788	Right-handed alpha
Helix 57	AG3	C	799	813	Right-handed alpha
Helix 58	AG4	C	816	820	Right-handed 310
Helix 59	AG5	C	822	827	Right-handed alpha
Helix 60	AG6	C	828	833	Right-handed 310
Helix 61	AG7	C	834	849	Right-handed alpha
Helix 62	AG8	C	856	864	Right-handed alpha
Helix 63	AG9	C	865	870	Right-handed alpha
Helix 64	AH1	C	873	877	Right-handed 310
Helix 65	AH2	C	879	887	Right-handed alpha
Helix 66	AH3	C	896	910	Right-handed alpha
Helix 67	AH4	C	911	914	Right-handed 310
Helix 68	AH5	C	915	923	Right-handed alpha
Helix 69	AH6	C	926	935	Right-handed alpha
Helix 70	AH7	C	939	948	Right-handed alpha
Helix 71	AH8	C	949	952	Right-handed 310
Helix 72	AH9	C	954	961	Right-handed 310
Helix 73	AI1	D	602	604	Right-handed 310
Helix 74	AI2	D	605	620	Right-handed alpha
Helix 75	AI3	D	649	655	Right-handed alpha
Helix 76	AI4	D	664	682	Right-handed alpha
Helix 77	AI5	D	690	692	Right-handed 310
Helix 78	AI6	D	726	730	Right-handed 310
Helix 79	AI7	D	739	744	Right-handed 310
Helix 80	AI8	D	753	769	Right-handed alpha
Helix 81	AI9	D	780	788	Right-handed alpha
Helix 82	AJ1	D	799	813	Right-handed alpha
Helix 83	AJ2	D	816	820	Right-handed 310
Helix 84	AJ3	D	822	828	Right-handed alpha
Helix 85	AJ4	D	829	833	Right-handed 310
Helix 86	AJ5	D	834	849	Right-handed alpha
Helix 87	AJ6	D	856	864	Right-handed alpha
Helix 88	AJ7	D	865	870	Right-handed alpha
Helix 89	AJ8	D	873	877	Right-handed 310
Helix 90	AJ9	D	879	887	Right-handed alpha
Helix 91	AK1	D	896	910	Right-handed alpha
Helix 92	AK2	D	911	914	Right-handed 310
Helix 93	AK3	D	915	923	Right-handed alpha
Helix 94	AK4	D	926	935	Right-handed alpha
Helix 95	AK5	D	939	948	Right-handed alpha
Helix 96	AK6	D	949	952	Right-handed 310
Helix 97	AK7	D	957	961	Right-handed 310

There are 12 sheets in PDB entry 6W3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	569	579	anti-parallel
Strand 3	A	585	591	anti-parallel
Strand 4	A	594	601	anti-parallel
Strand 5	A	638	643	anti-parallel
Strand 6	A	628	633	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	648	first strand
Strand 2	A	694	697	anti-parallel
Strand 3	A	707	709	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	685	first strand
Strand 2	A	716	717	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	569	579	anti-parallel
Strand 3	B	585	591	anti-parallel
Strand 4	B	594	601	anti-parallel
Strand 5	B	638	643	anti-parallel
Strand 6	B	628	633	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	648	first strand
Strand 2	B	694	697	anti-parallel
Strand 3	B	707	709	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	685	first strand
Strand 2	B	716	717	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	566	first strand
Strand 2	C	569	578	anti-parallel
Strand 3	C	585	591	anti-parallel
Strand 4	C	594	601	anti-parallel
Strand 5	C	638	643	anti-parallel
Strand 6	C	628	633	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	648	first strand
Strand 2	C	694	697	anti-parallel
Strand 3	C	707	709	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	684	685	first strand
Strand 2	C	716	717	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	566	first strand
Strand 2	D	569	579	anti-parallel
Strand 3	D	585	591	anti-parallel
Strand 4	D	595	601	anti-parallel
Strand 5	D	638	643	anti-parallel
Strand 6	D	628	633	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	645	648	first strand
Strand 2	D	694	697	anti-parallel
Strand 3	D	707	709	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	685	first strand
Strand 2	D	716	717	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W3C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3C