Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W3C entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 13 chains in PDB entry 6W3C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 560HIS 723
A
PHE 725PHE 725
A
ARG 727ARG 728
A
GLY 730GLU 964
B
GLU 560HIS 723
B
PHE 725PHE 725
B
ARG 727ARG 728
B
GLY 730HIS 963
C
GLU 560HIS 723
C
PHE 725PHE 725
C
ARG 727ARG 728
C
GLY 730HIS 963
D
GLU 560GLY 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 6W3C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
602 604Right-handed 310
Helix 2
AA2
A
605 620Right-handed alpha
Helix 3
AA3
A
649 655Right-handed alpha
Helix 4
AA4
A
664 682Right-handed alpha
Helix 5
AA5
A
739 743Right-handed 310
Helix 6
AA6
A
753 769Right-handed alpha
Helix 7
AA7
A
777 779Right-handed 310
Helix 8
AA8
A
780 788Right-handed alpha
Helix 9
AA9
A
799 813Right-handed alpha
Helix 10
AB1
A
816 820Right-handed 310
Helix 11
AB2
A
822 828Right-handed alpha
Helix 12
AB3
A
829 833Right-handed 310
Helix 13
AB4
A
834 849Right-handed alpha
Helix 14
AB5
A
856 864Right-handed alpha
Helix 15
AB6
A
865 870Right-handed alpha
Helix 16
AB7
A
873 877Right-handed 310
Helix 17
AB8
A
879 887Right-handed alpha
Helix 18
AB9
A
896 910Right-handed alpha
Helix 19
AC1
A
911 914Right-handed 310
Helix 20
AC2
A
915 923Right-handed alpha
Helix 21
AC3
A
926 937Right-handed alpha
Helix 22
AC4
A
939 948Right-handed alpha
Helix 23
AC5
A
949 952Right-handed 310
Helix 24
AC6
B
581 583Right-handed 310
Helix 25
AC7
B
602 604Right-handed 310
Helix 26
AC8
B
605 620Right-handed alpha
Helix 27
AC9
B
649 655Right-handed alpha
Helix 28
AD1
B
664 682Right-handed alpha
Helix 29
AD2
B
739 744Right-handed 310
Helix 30
AD3
B
753 769Right-handed alpha
Helix 31
AD4
B
780 788Right-handed alpha
Helix 32
AD5
B
799 813Right-handed alpha
Helix 33
AD6
B
816 820Right-handed 310
Helix 34
AD7
B
822 828Right-handed alpha
Helix 35
AD8
B
829 833Right-handed 310
Helix 36
AD9
B
834 849Right-handed alpha
Helix 37
AE1
B
856 864Right-handed alpha
Helix 38
AE2
B
865 871Right-handed alpha
Helix 39
AE3
B
873 877Right-handed 310
Helix 40
AE4
B
879 887Right-handed alpha
Helix 41
AE5
B
896 910Right-handed alpha
Helix 42
AE6
B
911 914Right-handed 310
Helix 43
AE7
B
915 923Right-handed alpha
Helix 44
AE8
B
926 935Right-handed alpha
Helix 45
AE9
B
939 948Right-handed alpha
Helix 46
AF1
B
949 952Right-handed 310
Helix 47
AF2
B
954 958Right-handed 310
Helix 48
AF3
C
602 604Right-handed 310
Helix 49
AF4
C
605 620Right-handed alpha
Helix 50
AF5
C
649 655Right-handed alpha
Helix 51
AF6
C
664 682Right-handed alpha
Helix 52
AF7
C
726 730Right-handed 310
Helix 53
AF8
C
739 743Right-handed 310
Helix 54
AF9
C
753 769Right-handed alpha
Helix 55
AG1
C
777 779Right-handed 310
Helix 56
AG2
C
780 788Right-handed alpha
Helix 57
AG3
C
799 813Right-handed alpha
Helix 58
AG4
C
816 820Right-handed 310
Helix 59
AG5
C
822 827Right-handed alpha
Helix 60
AG6
C
828 833Right-handed 310
Helix 61
AG7
C
834 849Right-handed alpha
Helix 62
AG8
C
856 864Right-handed alpha
Helix 63
AG9
C
865 870Right-handed alpha
Helix 64
AH1
C
873 877Right-handed 310
Helix 65
AH2
C
879 887Right-handed alpha
Helix 66
AH3
C
896 910Right-handed alpha
Helix 67
AH4
C
911 914Right-handed 310
Helix 68
AH5
C
915 923Right-handed alpha
Helix 69
AH6
C
926 935Right-handed alpha
Helix 70
AH7
C
939 948Right-handed alpha
Helix 71
AH8
C
949 952Right-handed 310
Helix 72
AH9
C
954 961Right-handed 310
Helix 73
AI1
D
602 604Right-handed 310
Helix 74
AI2
D
605 620Right-handed alpha
Helix 75
AI3
D
649 655Right-handed alpha
Helix 76
AI4
D
664 682Right-handed alpha
Helix 77
AI5
D
690 692Right-handed 310
Helix 78
AI6
D
726 730Right-handed 310
Helix 79
AI7
D
739 744Right-handed 310
Helix 80
AI8
D
753 769Right-handed alpha
Helix 81
AI9
D
780 788Right-handed alpha
Helix 82
AJ1
D
799 813Right-handed alpha
Helix 83
AJ2
D
816 820Right-handed 310
Helix 84
AJ3
D
822 828Right-handed alpha
Helix 85
AJ4
D
829 833Right-handed 310
Helix 86
AJ5
D
834 849Right-handed alpha
Helix 87
AJ6
D
856 864Right-handed alpha
Helix 88
AJ7
D
865 870Right-handed alpha
Helix 89
AJ8
D
873 877Right-handed 310
Helix 90
AJ9
D
879 887Right-handed alpha
Helix 91
AK1
D
896 910Right-handed alpha
Helix 92
AK2
D
911 914Right-handed 310
Helix 93
AK3
D
915 923Right-handed alpha
Helix 94
AK4
D
926 935Right-handed alpha
Helix 95
AK5
D
939 948Right-handed alpha
Helix 96
AK6
D
949 952Right-handed 310
Helix 97
AK7
D
957 961Right-handed 310
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There are 12 sheets in PDB entry 6W3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
564 566first strand
Strand 2
A
569 579anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
594 601anti-parallel
Strand 5
A
638 643anti-parallel
Strand 6
A
628 633anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
645 648first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
707 709anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
684 685first strand
Strand 2
A
716 717anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
564 566first strand
Strand 2
B
569 579anti-parallel
Strand 3
B
585 591anti-parallel
Strand 4
B
594 601anti-parallel
Strand 5
B
638 643anti-parallel
Strand 6
B
628 633anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
645 648first strand
Strand 2
B
694 697anti-parallel
Strand 3
B
707 709anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
684 685first strand
Strand 2
B
716 717anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
564 566first strand
Strand 2
C
569 578anti-parallel
Strand 3
C
585 591anti-parallel
Strand 4
C
594 601anti-parallel
Strand 5
C
638 643anti-parallel
Strand 6
C
628 633anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
645 648first strand
Strand 2
C
694 697anti-parallel
Strand 3
C
707 709anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
684 685first strand
Strand 2
C
716 717anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
564 566first strand
Strand 2
D
569 579anti-parallel
Strand 3
D
585 591anti-parallel
Strand 4
D
595 601anti-parallel
Strand 5
D
638 643anti-parallel
Strand 6
D
628 633anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
645 648first strand
Strand 2
D
694 697anti-parallel
Strand 3
D
707 709anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
684 685first strand
Strand 2
D
716 717anti-parallel
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