Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W3F entry

There are 2 chains in PDB entry 6W3F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLY 114
B	ASP 1	GLY 114

There are 9 helices in PDB entry 6W3F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	3	Right-handed 310
Helix 2	AA2	A	4	20	Right-handed alpha
Helix 3	AA3	A	21	28	Right-handed alpha
Helix 4	AA4	A	44	56	Right-handed alpha
Helix 5	AA5	A	57	59	Right-handed 310
Helix 6	AA6	B	1	3	Right-handed 310
Helix 7	AA7	B	4	20	Right-handed alpha
Helix 8	AA8	B	21	27	Right-handed alpha
Helix 9	AA9	B	44	57	Right-handed alpha

There is 1 sheet (AA1) in PDB entry 6W3F.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	37	anti-parallel
Strand 3	A	105	113	parallel
Strand 4	A	89	102	anti-parallel
Strand 5	A	75	86	anti-parallel
Strand 6	A	61	72	anti-parallel
Strand 7	B	61	72	anti-parallel
Strand 8	B	75	86	anti-parallel
Strand 9	B	89	102	anti-parallel
Strand 10	B	105	113	anti-parallel
Strand 11	B	29	37	parallel
Strand 12	B	40	43	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W3F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3F