Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W3P entry

There are 2 chains in PDB entry 6W3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 39LYS 285
B
 GLY 37ALA 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6W3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 85Right-handed alpha
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
93 113Right-handed alpha
Helix 4
AA4
A
145 148Right-handed 310
Helix 5
AA5
A
149 156Right-handed alpha
Helix 6
AA6
A
199 209Right-handed alpha
Helix 7
AA7
A
227 232Right-handed 310
Helix 8
AA8
A
237 248Right-handed alpha
Helix 9
AA9
A
280 285Right-handed alpha
Helix 10
AB1
B
39 43Right-handed 310
Helix 11
AB2
B
44 85Right-handed alpha
Helix 12
AB3
B
87 92Right-handed 310
Helix 13
AB4
B
93 113Right-handed alpha
Helix 14
AB5
B
145 148Right-handed 310
Helix 15
AB6
B
149 157Right-handed alpha
Helix 16
AB7
B
199 209Right-handed alpha
Helix 17
AB8
B
227 232Right-handed 310
Helix 18
AB9
B
237 246Right-handed alpha
Helix 19
AC1
B
280 284Right-handed alpha
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There are 6 sheets in PDB entry 6W3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
188 198anti-parallel
Strand 5
A
175 185anti-parallel
Strand 6
A
162 163anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
188 198anti-parallel
Strand 5
A
175 185anti-parallel
Strand 6
A
167 168anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
272 279anti-parallel
Strand 4
A
260 269anti-parallel
Strand 5
A
253 257anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
188 198anti-parallel
Strand 5
B
175 185anti-parallel
Strand 6
B
162 163anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
188 198anti-parallel
Strand 5
B
175 185anti-parallel
Strand 6
B
167 168anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
213 216anti-parallel
Strand 3
B
272 279anti-parallel
Strand 4
B
260 269anti-parallel
Strand 5
B
253 257anti-parallel
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