Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W3Z entry

There are 4 chains in PDB entry 6W3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	LYS 360
B	SER 29	HIS 361
C	ASP 10	HIS 361
D	GLU 15	LYS 360

There are 71 helices in PDB entry 6W3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	42	49	Right-handed alpha
Helix 4	AA4	A	50	53	Right-handed 310
Helix 5	AA5	A	54	75	Right-handed alpha
Helix 6	AA6	A	102	108	Right-handed alpha
Helix 7	AA7	A	110	120	Right-handed alpha
Helix 8	AA8	A	129	142	Right-handed alpha
Helix 9	AA9	A	152	159	Right-handed alpha
Helix 10	AB1	A	171	196	Right-handed alpha
Helix 11	AB2	A	200	213	Right-handed alpha
Helix 12	AB3	A	217	225	Right-handed alpha
Helix 13	AB4	A	237	246	Right-handed alpha
Helix 14	AB5	A	256	270	Right-handed alpha
Helix 15	AB6	A	282	294	Right-handed alpha
Helix 16	AB7	A	318	326	Right-handed alpha
Helix 17	AB8	A	340	352	Right-handed alpha
Helix 18	AB9	A	352	360	Right-handed alpha
Helix 19	AC1	B	36	40	Right-handed 310
Helix 20	AC2	B	42	49	Right-handed alpha
Helix 21	AC3	B	50	53	Right-handed 310
Helix 22	AC4	B	54	75	Right-handed alpha
Helix 23	AC5	B	102	108	Right-handed alpha
Helix 24	AC6	B	110	120	Right-handed alpha
Helix 25	AC7	B	129	139	Right-handed alpha
Helix 26	AC8	B	152	159	Right-handed alpha
Helix 27	AC9	B	171	196	Right-handed alpha
Helix 28	AD1	B	200	213	Right-handed alpha
Helix 29	AD2	B	217	225	Right-handed alpha
Helix 30	AD3	B	237	251	Right-handed alpha
Helix 31	AD4	B	256	270	Right-handed alpha
Helix 32	AD5	B	282	294	Right-handed alpha
Helix 33	AD6	B	318	325	Right-handed alpha
Helix 34	AD7	B	340	352	Right-handed alpha
Helix 35	AD8	B	352	361	Right-handed alpha
Helix 36	AD9	C	11	19	Right-handed alpha
Helix 37	AE1	C	36	40	Right-handed 310
Helix 38	AE2	C	42	49	Right-handed alpha
Helix 39	AE3	C	50	53	Right-handed 310
Helix 40	AE4	C	54	75	Right-handed alpha
Helix 41	AE5	C	103	108	Right-handed alpha
Helix 42	AE6	C	109	120	Right-handed alpha
Helix 43	AE7	C	129	139	Right-handed alpha
Helix 44	AE8	C	152	159	Right-handed alpha
Helix 45	AE9	C	171	196	Right-handed alpha
Helix 46	AF1	C	200	213	Right-handed alpha
Helix 47	AF2	C	217	225	Right-handed alpha
Helix 48	AF3	C	237	251	Right-handed alpha
Helix 49	AF4	C	256	270	Right-handed alpha
Helix 50	AF5	C	282	294	Right-handed alpha
Helix 51	AF6	C	318	325	Right-handed alpha
Helix 52	AF7	C	340	352	Right-handed alpha
Helix 53	AF8	C	352	361	Right-handed alpha
Helix 54	AF9	D	36	40	Right-handed 310
Helix 55	AG1	D	42	49	Right-handed alpha
Helix 56	AG2	D	49	54	Right-handed alpha
Helix 57	AG3	D	54	76	Right-handed alpha
Helix 58	AG4	D	102	108	Right-handed alpha
Helix 59	AG5	D	109	120	Right-handed alpha
Helix 60	AG6	D	129	139	Right-handed alpha
Helix 61	AG7	D	152	159	Right-handed alpha
Helix 62	AG8	D	171	196	Right-handed alpha
Helix 63	AG9	D	200	213	Right-handed alpha
Helix 64	AH1	D	217	225	Right-handed alpha
Helix 65	AH2	D	237	251	Right-handed alpha
Helix 66	AH3	D	256	270	Right-handed alpha
Helix 67	AH4	D	282	294	Right-handed alpha
Helix 68	AH5	D	308	312	Right-handed 310
Helix 69	AH6	D	318	325	Right-handed alpha
Helix 70	AH7	D	340	352	Right-handed alpha
Helix 71	AH8	D	352	360	Right-handed alpha

There are 11 sheets in PDB entry 6W3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	90	91	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	125	127	parallel
Strand 3	A	96	101	parallel
Strand 4	A	274	279	parallel
Strand 5	A	300	305	parallel
Strand 6	A	335	338	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	167	170	anti-parallel
Strand 3	A	161	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	90	91	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	125	127	parallel
Strand 3	B	96	101	parallel
Strand 4	B	274	279	parallel
Strand 5	B	300	305	parallel
Strand 6	B	335	338	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	167	170	anti-parallel
Strand 3	B	161	164	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	90	91	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	125	127	parallel
Strand 3	C	96	101	parallel
Strand 4	C	274	279	parallel
Strand 5	C	300	304	parallel
Strand 6	C	335	337	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	167	170	anti-parallel
Strand 3	C	161	164	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	230	first strand
Strand 2	D	125	127	parallel
Strand 3	D	96	101	parallel
Strand 4	D	274	279	parallel
Strand 5	D	300	305	parallel
Strand 6	D	335	338	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	167	170	anti-parallel
Strand 3	D	161	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W3Z