Analysis of interatomic Contacts of Structural Units in PDB entry:
6W4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W4P entry

There are 10 chains in PDB entry 6W4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 17	ALA 144
B	VAL 2	PRO 127
C	VAL 7	ALA 132
D	VAL 5	PRO 127
E	VAL 3	PRO 125
F	VAL 2	ALA 123
G	VAL 17	ALA 144
I	VAL 2	PRO 127
J	VAL 7	ALA 132
K	VAL 5	HIS 110

There are 62 helices in PDB entry 6W4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	35	Right-handed alpha
Helix 2	AA2	A	37	44	Right-handed alpha
Helix 3	AA3	A	53	57	Right-handed 310
Helix 4	AA4	A	64	73	Right-handed alpha
Helix 5	AA5	A	73	78	Right-handed alpha
Helix 6	AA6	B	3	21	Right-handed alpha
Helix 7	AA7	B	22	29	Right-handed alpha
Helix 8	AA8	B	38	42	Right-handed 310
Helix 9	AA9	B	49	58	Right-handed alpha
Helix 10	AB1	C	8	25	Right-handed alpha
Helix 11	AB2	C	27	34	Right-handed alpha
Helix 12	AB3	C	44	47	Right-handed 310
Helix 13	AB4	C	54	63	Right-handed alpha
Helix 14	AB5	D	6	23	Right-handed alpha
Helix 15	AB6	D	25	32	Right-handed alpha
Helix 16	AB7	D	41	45	Right-handed 310
Helix 17	AB8	D	52	62	Right-handed alpha
Helix 18	AB9	E	4	21	Right-handed alpha
Helix 19	AC1	E	23	30	Right-handed alpha
Helix 20	AC2	E	39	43	Right-handed 310
Helix 21	AC3	E	50	58	Right-handed alpha
Helix 22	AC4	F	3	20	Right-handed alpha
Helix 23	AC5	F	22	29	Right-handed alpha
Helix 24	AC6	F	38	42	Right-handed 310
Helix 25	AC7	F	49	54	Right-handed alpha
Helix 26	AC8	G	18	35	Right-handed alpha
Helix 27	AC9	G	37	44	Right-handed alpha
Helix 28	AD1	G	53	57	Right-handed 310
Helix 29	AD2	G	64	73	Right-handed alpha
Helix 30	AD3	G	73	78	Right-handed alpha
Helix 31	AD4	I	3	21	Right-handed alpha
Helix 32	AD5	I	22	29	Right-handed alpha
Helix 33	AD6	I	38	42	Right-handed 310
Helix 34	AD7	I	49	58	Right-handed alpha
Helix 35	AD8	J	8	25	Right-handed alpha
Helix 36	AD9	J	27	34	Right-handed alpha
Helix 37	AE1	J	44	47	Right-handed 310
Helix 38	AE2	J	54	63	Right-handed alpha
Helix 39	AE3	K	6	23	Right-handed alpha
Helix 40	AE4	K	25	32	Right-handed alpha
Helix 41	AE5	K	41	45	Right-handed 310
Helix 42	AE6	K	52	62	Right-handed alpha
Helix 43	AE7	L	4	21	Right-handed alpha
Helix 44	AE8	L	23	30	Right-handed alpha
Helix 45	AE9	L	39	43	Right-handed 310
Helix 46	AF1	L	50	58	Right-handed alpha
Helix 47	AF2	M	3	20	Right-handed alpha
Helix 48	AF3	M	22	29	Right-handed alpha
Helix 49	AF4	M	38	42	Right-handed 310
Helix 50	AF5	M	49	54	Right-handed alpha
Helix 51	AF6	H	2	6	Right-handed alpha
Helix 52	AF7	H	41	59	Right-handed alpha
Helix 53	AF8	H	88	96	Right-handed alpha
Helix 54	AF9	H	100	121	Right-handed alpha
Helix 55	AG1	H	168	172	Right-handed 310
Helix 56	AG2	H	173	178	Right-handed alpha
Helix 57	AG3	H	184	201	Right-handed alpha
Helix 58	AG4	H	209	220	Right-handed alpha
Helix 59	AG5	H	233	244	Right-handed alpha
Helix 60	AG6	H	253	260	Right-handed alpha
Helix 61	AG7	H	263	270	Right-handed alpha
Helix 62	AG8	H	275	293	Right-handed alpha

There are 14 sheets in PDB entry 6W4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	133	142	parallel
Strand 4	A	116	130	anti-parallel
Strand 5	A	98	110	anti-parallel
Strand 6	A	83	93	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	30	37	anti-parallel
Strand 3	B	115	125	parallel
Strand 4	B	98	112	anti-parallel
Strand 5	B	80	92	anti-parallel
Strand 6	B	65	75	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	35	42	anti-parallel
Strand 3	C	122	130	parallel
Strand 4	C	104	117	anti-parallel
Strand 5	C	86	98	anti-parallel
Strand 6	C	71	81	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	33	40	anti-parallel
Strand 3	D	116	125	parallel
Strand 4	D	98	111	anti-parallel
Strand 5	D	80	92	anti-parallel
Strand 6	D	65	75	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	31	38	anti-parallel
Strand 3	E	114	122	parallel
Strand 4	E	96	109	anti-parallel
Strand 5	E	78	90	anti-parallel
Strand 6	E	63	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	30	37	anti-parallel
Strand 3	F	113	122	parallel
Strand 4	F	94	108	anti-parallel
Strand 5	F	77	90	anti-parallel
Strand 6	F	62	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	133	142	parallel
Strand 4	G	116	130	anti-parallel
Strand 5	G	98	110	anti-parallel
Strand 6	G	83	93	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	47	first strand
Strand 2	I	30	37	anti-parallel
Strand 3	I	115	125	parallel
Strand 4	I	98	112	anti-parallel
Strand 5	I	80	92	anti-parallel
Strand 6	I	65	75	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	50	52	first strand
Strand 2	J	35	42	anti-parallel
Strand 3	J	122	130	parallel
Strand 4	J	104	117	anti-parallel
Strand 5	J	86	98	anti-parallel
Strand 6	J	71	81	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	49	50	first strand
Strand 2	K	33	40	anti-parallel
Strand 3	K	116	125	parallel
Strand 4	K	98	111	anti-parallel
Strand 5	K	80	92	anti-parallel
Strand 6	K	65	75	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	48	first strand
Strand 2	L	31	38	anti-parallel
Strand 3	L	114	122	parallel
Strand 4	L	96	109	anti-parallel
Strand 5	L	78	90	anti-parallel
Strand 6	L	63	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	46	47	first strand
Strand 2	M	30	37	anti-parallel
Strand 3	M	113	122	parallel
Strand 4	M	94	108	anti-parallel
Strand 5	M	77	90	anti-parallel
Strand 6	M	62	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	12	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	29	37	anti-parallel
Strand 4	H	76	81	anti-parallel
Strand 5	H	67	72	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	144	146	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W4P