Analysis of interatomic Contacts of Structural Units in PDB entry:
6W52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W52 entry

There are 4 chains in PDB entry 6W52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	MET 97
B	PHE 137	SER 509
H	GLN 1	PRO 213
L	GLN 1	THR 209

There are 22 helices in PDB entry 6W52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	96	Right-handed alpha
Helix 2	AA2	B	138	142	Right-handed 310
Helix 3	AA3	B	148	159	Right-handed alpha
Helix 4	AA4	B	162	172	Right-handed alpha
Helix 5	AA5	B	195	200	Right-handed alpha
Helix 6	AA6	B	203	208	Right-handed alpha
Helix 7	AA7	B	217	225	Right-handed alpha
Helix 8	AA8	B	227	241	Right-handed alpha
Helix 9	AA9	B	253	263	Right-handed alpha
Helix 10	AB1	B	267	277	Right-handed alpha
Helix 11	AB2	B	277	284	Right-handed alpha
Helix 12	AB3	B	354	358	Right-handed 310
Helix 13	AB4	B	370	372	Right-handed 310
Helix 14	AB5	B	376	379	Right-handed 310
Helix 15	AB6	B	380	385	Right-handed alpha
Helix 16	AB7	B	473	478	Right-handed 310
Helix 17	AB8	B	492	508	Right-handed alpha
Helix 18	AB9	H	61	64	Right-handed 310
Helix 19	AC1	H	83	87	Right-handed 310
Helix 20	AC2	H	187	192	Right-handed alpha
Helix 21	AC3	L	121	126	Right-handed alpha
Helix 22	AC4	L	181	186	Right-handed alpha

There are 15 sheets in PDB entry 6W52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	348	352	anti-parallel
Strand 3	B	340	345	anti-parallel
Strand 4	B	313	318	anti-parallel
Strand 5	A	38	44	anti-parallel
Strand 6	A	29	33	anti-parallel
Strand 7	B	465	469	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	A	47	49	anti-parallel
Strand 3	B	365	368	parallel
Strand 4	B	359	360	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	A	52	60	parallel
Strand 4	B	296	304	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	487	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	422	425	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	457	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	47	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	136	145	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	164	170	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	206	210	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	84	93	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	84	93	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	66	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	200	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W52

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W52