Analysis of interatomic Contacts of Structural Units in PDB entry:
6W5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W5C entry

There are 5 chains in PDB entry 6W5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8LYS 1093
C
 C 1 G 36
D
 C 1 C 10
E
 A 28 G 36
B
 A -22 C 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6W5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 54Right-handed alpha
Helix 2
AA2
A
70 80Right-handed alpha
Helix 3
AA3
A
93 95Right-handed 310
Helix 4
AA4
A
96 104Right-handed alpha
Helix 5
AA5
A
110 118Right-handed alpha
Helix 6
AA6
A
132 143Right-handed alpha
Helix 7
AA7
A
145 159Right-handed alpha
Helix 8
AA8
A
168 177Right-handed alpha
Helix 9
AA9
A
184 198Right-handed alpha
Helix 10
AB1
A
212 219Right-handed alpha
Helix 11
AB2
A
224 232Right-handed alpha
Helix 12
AB3
A
242 251Right-handed alpha
Helix 13
AB4
A
261 269Right-handed alpha
Helix 14
AB5
A
270 272Right-handed 310
Helix 15
AB6
A
281 293Right-handed alpha
Helix 16
AB7
A
297 333Right-handed alpha
Helix 17
AB8
A
337 346Right-handed alpha
Helix 18
AB9
A
347 350Right-handed 310
Helix 19
AC1
A
364 369Right-handed 310
Helix 20
AC2
A
372 393Right-handed alpha
Helix 21
AC3
A
398 422Right-handed alpha
Helix 22
AC4
A
429 439Right-handed alpha
Helix 23
AC5
A
444 463Right-handed alpha
Helix 24
AC6
A
491 501Right-handed alpha
Helix 25
AC7
A
533 540Right-handed alpha
Helix 26
AC8
A
571 581Right-handed alpha
Helix 27
AC9
A
582 584Right-handed 310
Helix 28
AD1
A
585 601Right-handed alpha
Helix 29
AD2
A
708 722Right-handed alpha
Helix 30
AD3
A
752 771Right-handed alpha
Helix 31
AD4
A
772 777Right-handed 310
Helix 32
AD5
A
778 787Right-handed alpha
Helix 33
AD6
A
800 822Right-handed alpha
Helix 34
AD7
A
838 846Right-handed alpha
Helix 35
AD8
A
846 886Right-handed alpha
Helix 36
AD9
A
905 914Right-handed alpha
Helix 37
AE1
A
916 929Right-handed alpha
Helix 38
AE2
A
967 971Right-handed 310
Helix 39
AE3
A
972 984Right-handed alpha
Helix 40
AE4
A
990 1008Right-handed alpha
Helix 41
AE5
A
1010 1015Right-handed alpha
Helix 42
AE6
A
1018 1033Right-handed alpha
Helix 43
AE7
A
1072 1082Right-handed alpha
Helix 44
AE8
A
1085 1090Right-handed alpha
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There are 6 sheets in PDB entry 6W5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
629 633anti-parallel
Strand 3
A
613 616anti-parallel
Strand 4
A
477 479anti-parallel
Strand 5
A
484 488parallel
Strand 6
A
510 518anti-parallel
Strand 7
A
523 531anti-parallel
Strand 8
A
19 20anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
126 129anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 683first strand
Strand 2
A
655 660anti-parallel
Strand 3
A
642 646anti-parallel
Strand 4
A
889 894parallel
Strand 5
A
936 939parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
675 676anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 688first strand
Strand 2
A
695 696anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1050first strand
Strand 2
A
1068 1070anti-parallel
Strand 3
A
1059 1061anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il