Analysis of interatomic Contacts of Structural Units in PDB entry:
6W5O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W5O entry

There are 16 chains in PDB entry 6W5O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 56	PHE 103
A	VAL 105	ASN 289
B	SER 56	PHE 103
B	VAL 105	ASN 289
C	SER 56	PHE 103
C	VAL 105	ASN 289
D	SER 56	PHE 103
D	VAL 105	ASN 289
E	SER 56	PHE 103
E	VAL 105	ASN 289
F	SER 56	PHE 103
F	VAL 105	ASN 289
G	SER 56	PHE 103
G	VAL 105	ASN 289
H	SER 56	PHE 103
H	VAL 105	ASN 289

There are 89 helices in PDB entry 6W5O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	68	Right-handed 310
Helix 2	AA2	A	89	94	Right-handed alpha
Helix 3	AA3	A	99	102	Right-handed 310
Helix 4	AA4	A	103	114	Right-handed alpha
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	141	148	Right-handed alpha
Helix 7	AA7	A	150	162	Right-handed alpha
Helix 8	AA8	A	162	173	Right-handed alpha
Helix 9	AA9	A	196	210	Right-handed alpha
Helix 10	AB1	A	215	226	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	B	58	62	Right-handed 310
Helix 13	AB4	B	64	69	Right-handed 310
Helix 14	AB5	B	89	95	Right-handed alpha
Helix 15	AB6	B	99	102	Right-handed 310
Helix 16	AB7	B	103	114	Right-handed alpha
Helix 17	AB8	B	133	137	Right-handed 310
Helix 18	AB9	B	141	148	Right-handed alpha
Helix 19	AC1	B	150	162	Right-handed alpha
Helix 20	AC2	B	162	174	Right-handed alpha
Helix 21	AC3	B	196	210	Right-handed alpha
Helix 22	AC4	B	215	226	Right-handed alpha
Helix 23	AC5	B	269	284	Right-handed alpha
Helix 24	AC6	C	58	62	Right-handed 310
Helix 25	AC7	C	64	68	Right-handed 310
Helix 26	AC8	C	91	95	Right-handed 310
Helix 27	AC9	C	99	102	Right-handed 310
Helix 28	AD1	C	103	114	Right-handed alpha
Helix 29	AD2	C	133	137	Right-handed 310
Helix 30	AD3	C	142	148	Right-handed alpha
Helix 31	AD4	C	150	173	Right-handed alpha
Helix 32	AD5	C	196	210	Right-handed alpha
Helix 33	AD6	C	215	226	Right-handed alpha
Helix 34	AD7	C	269	284	Right-handed alpha
Helix 35	AD8	D	58	62	Right-handed 310
Helix 36	AD9	D	64	68	Right-handed 310
Helix 37	AE1	D	91	95	Right-handed 310
Helix 38	AE2	D	99	102	Right-handed 310
Helix 39	AE3	D	103	114	Right-handed alpha
Helix 40	AE4	D	133	137	Right-handed 310
Helix 41	AE5	D	141	148	Right-handed alpha
Helix 42	AE6	D	150	162	Right-handed alpha
Helix 43	AE7	D	162	173	Right-handed alpha
Helix 44	AE8	D	196	210	Right-handed alpha
Helix 45	AE9	D	215	226	Right-handed alpha
Helix 46	AF1	D	269	284	Right-handed alpha
Helix 47	AF2	E	58	62	Right-handed 310
Helix 48	AF3	E	64	69	Right-handed 310
Helix 49	AF4	E	89	94	Right-handed alpha
Helix 50	AF5	E	99	102	Right-handed 310
Helix 51	AF6	E	103	114	Right-handed alpha
Helix 52	AF7	E	133	137	Right-handed 310
Helix 53	AF8	E	142	148	Right-handed alpha
Helix 54	AF9	E	150	174	Right-handed alpha
Helix 55	AG1	E	196	210	Right-handed alpha
Helix 56	AG2	E	215	226	Right-handed alpha
Helix 57	AG3	E	269	284	Right-handed alpha
Helix 58	AG4	F	58	62	Right-handed 310
Helix 59	AG5	F	64	69	Right-handed 310
Helix 60	AG6	F	89	94	Right-handed alpha
Helix 61	AG7	F	99	102	Right-handed 310
Helix 62	AG8	F	103	114	Right-handed alpha
Helix 63	AG9	F	142	148	Right-handed alpha
Helix 64	AH1	F	150	162	Right-handed alpha
Helix 65	AH2	F	162	173	Right-handed alpha
Helix 66	AH3	F	196	210	Right-handed alpha
Helix 67	AH4	F	215	226	Right-handed alpha
Helix 68	AH5	F	269	284	Right-handed alpha
Helix 69	AH6	G	58	62	Right-handed 310
Helix 70	AH7	G	64	68	Right-handed 310
Helix 71	AH8	G	89	94	Right-handed alpha
Helix 72	AH9	G	99	102	Right-handed 310
Helix 73	AI1	G	103	114	Right-handed alpha
Helix 74	AI2	G	141	149	Right-handed alpha
Helix 75	AI3	G	150	173	Right-handed alpha
Helix 76	AI4	G	196	210	Right-handed alpha
Helix 77	AI5	G	215	226	Right-handed alpha
Helix 78	AI6	G	269	284	Right-handed alpha
Helix 79	AI7	H	58	62	Right-handed 310
Helix 80	AI8	H	64	68	Right-handed 310
Helix 81	AI9	H	89	94	Right-handed alpha
Helix 82	AJ1	H	99	102	Right-handed 310
Helix 83	AJ2	H	103	114	Right-handed alpha
Helix 84	AJ3	H	142	148	Right-handed alpha
Helix 85	AJ4	H	150	162	Right-handed alpha
Helix 86	AJ5	H	162	173	Right-handed alpha
Helix 87	AJ6	H	196	210	Right-handed alpha
Helix 88	AJ7	H	215	226	Right-handed alpha
Helix 89	AJ8	H	269	283	Right-handed alpha

There are 15 sheets in PDB entry 6W5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	258	266	anti-parallel
Strand 4	A	246	255	anti-parallel
Strand 5	A	235	243	anti-parallel
Strand 6	A	227	230	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	259	266	anti-parallel
Strand 4	B	247	254	anti-parallel
Strand 5	B	235	237	anti-parallel
Strand 6	B	227	230	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	259	266	anti-parallel
Strand 4	B	247	254	anti-parallel
Strand 5	B	239	241	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	88	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	259	266	anti-parallel
Strand 4	C	246	255	anti-parallel
Strand 5	C	234	243	anti-parallel
Strand 6	C	227	230	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	140	141	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	258	266	anti-parallel
Strand 4	D	246	255	anti-parallel
Strand 5	D	234	237	anti-parallel
Strand 6	D	227	230	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	258	266	anti-parallel
Strand 4	D	246	255	anti-parallel
Strand 5	D	239	243	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	73	79	anti-parallel
Strand 3	E	258	266	anti-parallel
Strand 4	E	247	255	anti-parallel
Strand 5	E	234	241	anti-parallel
Strand 6	E	227	230	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	124	first strand
Strand 2	E	140	141	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	73	79	anti-parallel
Strand 3	F	259	266	anti-parallel
Strand 4	F	247	254	anti-parallel
Strand 5	F	235	242	anti-parallel
Strand 6	F	227	230	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	124	first strand
Strand 2	F	140	141	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	88	first strand
Strand 2	G	73	79	anti-parallel
Strand 3	G	258	266	anti-parallel
Strand 4	G	246	255	anti-parallel
Strand 5	G	234	243	anti-parallel
Strand 6	G	227	230	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	258	266	anti-parallel
Strand 4	H	246	255	anti-parallel
Strand 5	H	234	237	anti-parallel
Strand 6	H	227	230	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	258	266	anti-parallel
Strand 4	H	246	255	anti-parallel
Strand 5	H	239	243	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	124	first strand
Strand 2	H	140	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W5O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W5O