Analysis of interatomic Contacts of Structural Units in PDB entry:
6W5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W5T entry

There is 1 chain in PDB entry 6W5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23VAL 1255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6W5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 63Right-handed alpha
Helix 2
AA2
A
64 67Right-handed 310
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
87 95Right-handed alpha
Helix 5
AA5
A
97 114Right-handed alpha
Helix 6
AA6
A
116 119Right-handed 310
Helix 7
AA7
A
149 161Right-handed alpha
Helix 8
AA8
A
171 176Right-handed 310
Helix 9
AA9
A
185 195Right-handed alpha
Helix 10
AB1
A
196 199Right-handed 310
Helix 11
AB2
A
268 291Right-handed alpha
Helix 12
AB3
A
292 295Right-handed 310
Helix 13
AB4
A
330 349Right-handed alpha
Helix 14
AB5
A
349 366Right-handed alpha
Helix 15
AB6
A
367 371Right-handed 310
Helix 16
AB7
A
376 382Right-handed alpha
Helix 17
AB8
A
386 399Right-handed alpha
Helix 18
AB9
A
436 453Right-handed alpha
Helix 19
AC1
A
463 468Right-handed alpha
Helix 20
AC2
A
483 488Right-handed 310
Helix 21
AC3
A
491 497Right-handed alpha
Helix 22
AC4
A
508 519Right-handed alpha
Helix 23
AC5
A
554 558Right-handed 310
Helix 24
AC6
A
574 594Right-handed alpha
Helix 25
AC7
A
607 617Right-handed alpha
Helix 26
AC8
A
620 639Right-handed alpha
Helix 27
AC9
A
653 679Right-handed alpha
Helix 28
AD1
A
685 711Right-handed alpha
Helix 29
AD2
A
720 750Right-handed alpha
Helix 30
AD3
A
754 789Right-handed alpha
Helix 31
AD4
A
816 824Right-handed alpha
Helix 32
AD5
A
825 830Right-handed alpha
Helix 33
AD6
A
833 852Right-handed alpha
Helix 34
AD7
A
853 856Right-handed 310
Helix 35
AD8
A
870 883Right-handed alpha
Helix 36
AD9
A
901 907Right-handed alpha
Helix 37
AE1
A
918 930Right-handed alpha
Helix 38
AE2
A
941 951Right-handed alpha
Helix 39
AE3
A
983 988Right-handed alpha
Helix 40
AE4
A
992 1005Right-handed alpha
Helix 41
AE5
A
1047 1070Right-handed alpha
Helix 42
AE6
A
1084 1089Right-handed alpha
Helix 43
AE7
A
1090 1092Right-handed 310
Helix 44
AE8
A
1093 1117Right-handed alpha
Helix 45
AE9
A
1120 1146Right-handed alpha
Helix 46
AF1
A
1150 1177Right-handed alpha
Helix 47
AF2
A
1182 1202Right-handed alpha
Helix 48
AF3
A
1202 1214Right-handed alpha
Helix 49
AF4
A
1219 1242Right-handed alpha
Helix 50
AF5
A
1242 1252Right-handed alpha
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There are 6 sheets in PDB entry 6W5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
140 147anti-parallel
Strand 3
A
206 208parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
560 562anti-parallel
Strand 3
A
408 410anti-parallel
Strand 4
A
602 603anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
429 431anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1039 1043first strand
Strand 2
A
885 893anti-parallel
Strand 3
A
1078 1081anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 960first strand
Strand 2
A
976 978anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1023 1025first strand
Strand 2
A
1033 1036anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il