Analysis of interatomic Contacts of Structural Units in PDB entry:
6W5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W5Y entry

There are 3 chains in PDB entry 6W5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 53PRO 206
B
 HIS 53ASP 215
C
 HIS 53TYR 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6W5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 74Right-handed 310
Helix 2
AA2
A
79 87Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
130 137Right-handed 310
Helix 6
AA6
B
72 74Right-handed 310
Helix 7
AA7
B
79 86Right-handed alpha
Helix 8
AA8
B
111 115Right-handed 310
Helix 9
AA9
B
130 137Right-handed 310
Helix 10
AB1
C
72 74Right-handed 310
Helix 11
AB2
C
79 86Right-handed alpha
Helix 12
AB3
C
111 115Right-handed 310
Helix 13
AB4
C
130 137Right-handed 310
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There are 6 sheets in PDB entry 6W5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
190 197parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
90 95anti-parallel
Strand 5
A
117 118anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
139 143anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
190 197parallel
Strand 3
B
176 182anti-parallel
Strand 4
B
91 95anti-parallel
Strand 5
B
117 118anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
157 162anti-parallel
Strand 3
B
139 143anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
190 197parallel
Strand 3
C
176 182anti-parallel
Strand 4
C
91 96anti-parallel
Strand 5
C
117 118anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 70first strand
Strand 2
C
157 162anti-parallel
Strand 3
C
139 143anti-parallel
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