Analysis of interatomic Contacts of Structural Units in PDB entry:
6W62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W62 entry

There are 2 chains in PDB entry 6W62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7LYS 1093
B
 G -16 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6W62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 54Right-handed alpha
Helix 2
AA2
A
70 80Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
110 118Right-handed alpha
Helix 5
AA5
A
132 142Right-handed alpha
Helix 6
AA6
A
145 159Right-handed alpha
Helix 7
AA7
A
168 176Right-handed alpha
Helix 8
AA8
A
301 307Right-handed alpha
Helix 9
AA9
A
308 331Right-handed alpha
Helix 10
AB1
A
337 346Right-handed alpha
Helix 11
AB2
A
364 368Right-handed 310
Helix 12
AB3
A
372 393Right-handed alpha
Helix 13
AB4
A
398 423Right-handed alpha
Helix 14
AB5
A
429 439Right-handed alpha
Helix 15
AB6
A
446 462Right-handed alpha
Helix 16
AB7
A
490 500Right-handed alpha
Helix 17
AB8
A
533 540Right-handed alpha
Helix 18
AB9
A
585 602Right-handed alpha
Helix 19
AC1
A
708 721Right-handed alpha
Helix 20
AC2
A
742 746Right-handed 310
Helix 21
AC3
A
752 771Right-handed alpha
Helix 22
AC4
A
772 778Right-handed 310
Helix 23
AC5
A
779 787Right-handed alpha
Helix 24
AC6
A
802 822Right-handed alpha
Helix 25
AC7
A
838 846Right-handed alpha
Helix 26
AC8
A
846 886Right-handed alpha
Helix 27
AC9
A
905 914Right-handed alpha
Helix 28
AD1
A
916 929Right-handed alpha
Helix 29
AD2
A
967 971Right-handed 310
Helix 30
AD3
A
972 983Right-handed alpha
Helix 31
AD4
A
990 1008Right-handed alpha
Helix 32
AD5
A
1010 1015Right-handed alpha
Helix 33
AD6
A
1018 1033Right-handed alpha
Helix 34
AD7
A
1072 1082Right-handed alpha
Helix 35
AD8
A
1085 1090Right-handed alpha
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There are 7 sheets in PDB entry 6W62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
629 632anti-parallel
Strand 3
A
613 614anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
126 129anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 479first strand
Strand 2
A
484 488parallel
Strand 3
A
510 518anti-parallel
Strand 4
A
523 531anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 683first strand
Strand 2
A
655 660anti-parallel
Strand 3
A
642 646anti-parallel
Strand 4
A
889 890parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 689first strand
Strand 2
A
694 695anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
963 966first strand
Strand 2
A
1038 1041anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1050first strand
Strand 2
A
1068 1070anti-parallel
Strand 3
A
1059 1061anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il