Analysis of interatomic Contacts of Structural Units in PDB entry:
6W65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W65 entry

There are 3 chains in PDB entry 6W65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LYS 274
B	SER 3	LYS 274
C	SER 3	LYS 274

There are 39 helices in PDB entry 6W65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	16	Right-handed alpha
Helix 2	AA2	A	16	33	Right-handed alpha
Helix 3	AA3	A	35	40	Right-handed alpha
Helix 4	AA4	A	44	46	Right-handed 310
Helix 5	AA5	A	54	65	Right-handed alpha
Helix 6	AA6	A	67	74	Right-handed alpha
Helix 7	AA7	A	79	91	Right-handed alpha
Helix 8	AA8	A	101	113	Right-handed alpha
Helix 9	AA9	A	133	143	Right-handed alpha
Helix 10	AB1	A	155	157	Right-handed 310
Helix 11	AB2	A	158	166	Right-handed alpha
Helix 12	AB3	A	186	192	Right-handed alpha
Helix 13	AB4	A	259	261	Right-handed 310
Helix 14	AB5	B	5	16	Right-handed alpha
Helix 15	AB6	B	16	33	Right-handed alpha
Helix 16	AB7	B	35	40	Right-handed alpha
Helix 17	AB8	B	44	46	Right-handed 310
Helix 18	AB9	B	54	64	Right-handed alpha
Helix 19	AC1	B	67	74	Right-handed alpha
Helix 20	AC2	B	79	90	Right-handed alpha
Helix 21	AC3	B	101	113	Right-handed alpha
Helix 22	AC4	B	133	143	Right-handed alpha
Helix 23	AC5	B	155	157	Right-handed 310
Helix 24	AC6	B	158	166	Right-handed alpha
Helix 25	AC7	B	186	192	Right-handed alpha
Helix 26	AC8	B	259	261	Right-handed 310
Helix 27	AC9	C	5	16	Right-handed alpha
Helix 28	AD1	C	16	33	Right-handed alpha
Helix 29	AD2	C	35	40	Right-handed alpha
Helix 30	AD3	C	44	46	Right-handed 310
Helix 31	AD4	C	54	64	Right-handed alpha
Helix 32	AD5	C	67	74	Right-handed alpha
Helix 33	AD6	C	80	91	Right-handed alpha
Helix 34	AD7	C	101	112	Right-handed alpha
Helix 35	AD8	C	133	143	Right-handed alpha
Helix 36	AD9	C	155	157	Right-handed 310
Helix 37	AE1	C	158	166	Right-handed alpha
Helix 38	AE2	C	186	192	Right-handed alpha
Helix 39	AE3	C	259	261	Right-handed 310

There are 12 sheets in PDB entry 6W65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	52	53	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	124	130	anti-parallel
Strand 3	A	263	272	anti-parallel
Strand 4	A	208	218	anti-parallel
Strand 5	A	147	154	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	124	130	anti-parallel
Strand 3	A	263	272	anti-parallel
Strand 4	A	208	218	anti-parallel
Strand 5	A	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	52	53	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	124	130	anti-parallel
Strand 3	B	263	272	anti-parallel
Strand 4	B	208	218	anti-parallel
Strand 5	B	147	154	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	124	130	anti-parallel
Strand 3	B	263	272	anti-parallel
Strand 4	B	208	218	anti-parallel
Strand 5	B	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	52	53	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	100	first strand
Strand 2	C	124	130	anti-parallel
Strand 3	C	263	272	anti-parallel
Strand 4	C	208	218	anti-parallel
Strand 5	C	147	154	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	100	first strand
Strand 2	C	124	130	anti-parallel
Strand 3	C	263	272	anti-parallel
Strand 4	C	208	218	anti-parallel
Strand 5	C	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	254	257	anti-parallel
Strand 3	C	223	224	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W65

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W65