Analysis of interatomic Contacts of Structural Units in PDB entry:
6W6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W6D entry

There is 1 chain in PDB entry 6W6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 46ASP 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6W6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 63Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
77 82Right-handed alpha
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
116 127Right-handed alpha
Helix 6
AA6
A
160 177Right-handed alpha
Helix 7
AA7
A
198 207Right-handed alpha
Helix 8
AA8
A
210 216Right-handed alpha
Helix 9
AA9
A
219 221Right-handed 310
Helix 10
AB1
A
222 232Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
262 268Right-handed alpha
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There are 4 sheets in PDB entry 6W6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
107 112parallel
Strand 3
A
85 89parallel
Strand 4
A
149 154parallel
Strand 5
A
178 185parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
320 331anti-parallel
Strand 3
A
283 296anti-parallel
Strand 4
A
188 196anti-parallel
Strand 5
A
251 257anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
320 331anti-parallel
Strand 3
A
283 296anti-parallel
Strand 4
A
305 308anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 278first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
353 361anti-parallel
Strand 4
A
367 373anti-parallel
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