Analysis of interatomic Contacts of Structural Units in PDB entry:
6W6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W6V entry

There are 11 chains in PDB entry 6W6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 2	U 335
B	LYS 71	VAL 875
D	SER 68	ASN 279
E	VAL 2	ASN 170
F	MET 1	GLN 158
G	ASN 6	VAL 140
H	LYS 4	GLN 128
I	MET 1	HIS 243
J	MET 1	PRO 293
K	LYS 3	ASN 81
L	MET 1	ILE 128

There are 89 helices in PDB entry 6W6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	72	81	Right-handed alpha
Helix 2	AA2	B	93	97	Right-handed 310
Helix 3	AA3	B	109	122	Right-handed alpha
Helix 4	AA4	B	145	163	Right-handed alpha
Helix 5	AA5	B	227	232	Right-handed alpha
Helix 6	AA6	B	242	247	Right-handed alpha
Helix 7	AA7	B	248	250	Right-handed 310
Helix 8	AA8	B	268	277	Right-handed alpha
Helix 9	AA9	B	309	318	Right-handed alpha
Helix 10	AB1	B	371	373	Right-handed 310
Helix 11	AB2	B	374	383	Right-handed alpha
Helix 12	AB3	B	384	386	Right-handed 310
Helix 13	AB4	B	408	413	Right-handed alpha
Helix 14	AB5	B	414	416	Right-handed 310
Helix 15	AB6	B	422	432	Right-handed alpha
Helix 16	AB7	B	452	456	Right-handed 310
Helix 17	AB8	B	463	467	Right-handed 310
Helix 18	AB9	B	475	480	Right-handed 310
Helix 19	AC1	B	483	492	Right-handed alpha
Helix 20	AC2	B	496	503	Right-handed alpha
Helix 21	AC3	B	509	519	Right-handed alpha
Helix 22	AC4	B	520	523	Right-handed 310
Helix 23	AC5	B	564	573	Right-handed alpha
Helix 24	AC6	B	583	593	Right-handed alpha
Helix 25	AC7	B	605	614	Right-handed alpha
Helix 26	AC8	B	615	625	Right-handed alpha
Helix 27	AC9	B	660	674	Right-handed alpha
Helix 28	AD1	B	702	714	Right-handed alpha
Helix 29	AD2	B	788	798	Right-handed alpha
Helix 30	AD3	B	816	818	Right-handed 310
Helix 31	AD4	B	844	848	Right-handed alpha
Helix 32	AD5	D	77	105	Right-handed alpha
Helix 33	AD6	D	116	126	Right-handed alpha
Helix 34	AD7	D	127	130	Right-handed 310
Helix 35	AD8	D	135	140	Right-handed 310
Helix 36	AD9	D	147	155	Right-handed alpha
Helix 37	AE1	D	168	174	Right-handed alpha
Helix 38	AE2	D	274	278	Right-handed 310
Helix 39	AE3	E	27	36	Right-handed alpha
Helix 40	AE4	E	44	55	Right-handed alpha
Helix 41	AE5	E	55	60	Right-handed alpha
Helix 42	AE6	E	61	66	Right-handed alpha
Helix 43	AE7	E	93	102	Right-handed alpha
Helix 44	AE8	E	123	142	Right-handed alpha
Helix 45	AE9	E	146	151	Right-handed 310
Helix 46	AF1	E	155	162	Right-handed alpha
Helix 47	AF2	F	19	30	Right-handed alpha
Helix 48	AF3	F	30	35	Right-handed alpha
Helix 49	AF4	F	54	66	Right-handed alpha
Helix 50	AF5	F	87	102	Right-handed alpha
Helix 51	AF6	G	40	52	Right-handed alpha
Helix 52	AF7	G	55	59	Right-handed 310
Helix 53	AF8	G	70	84	Right-handed alpha
Helix 54	AF9	H	35	46	Right-handed alpha
Helix 55	AG1	H	47	51	Right-handed 310
Helix 56	AG2	H	73	82	Right-handed alpha
Helix 57	AG3	H	114	118	Right-handed 310
Helix 58	AG4	I	19	37	Right-handed alpha
Helix 59	AG5	I	113	121	Right-handed alpha
Helix 60	AG6	I	142	152	Right-handed alpha
Helix 61	AG7	I	161	166	Right-handed alpha
Helix 62	AG8	I	166	184	Right-handed alpha
Helix 63	AG9	I	206	213	Right-handed alpha
Helix 64	AH1	I	217	222	Right-handed alpha
Helix 65	AH2	I	226	239	Right-handed alpha
Helix 66	AH3	I	240	243	Right-handed 310
Helix 67	AH4	J	19	37	Right-handed alpha
Helix 68	AH5	J	56	60	Right-handed 310
Helix 69	AH6	J	64	69	Right-handed alpha
Helix 70	AH7	J	69	77	Right-handed alpha
Helix 71	AH8	J	99	104	Right-handed alpha
Helix 72	AH9	J	113	120	Right-handed alpha
Helix 73	AI1	J	146	151	Right-handed alpha
Helix 74	AI2	J	161	165	Right-handed 310
Helix 75	AI3	J	167	184	Right-handed alpha
Helix 76	AI4	J	197	201	Right-handed 310
Helix 77	AI5	J	203	206	Right-handed 310
Helix 78	AI6	J	207	213	Right-handed alpha
Helix 79	AI7	J	217	225	Right-handed alpha
Helix 80	AI8	J	226	238	Right-handed alpha
Helix 81	AI9	K	8	23	Right-handed alpha
Helix 82	AJ1	K	33	46	Right-handed alpha
Helix 83	AJ2	L	7	25	Right-handed alpha
Helix 84	AJ3	L	26	30	Right-handed 310
Helix 85	AJ4	L	34	50	Right-handed alpha
Helix 86	AJ5	L	69	76	Right-handed 310
Helix 87	AJ6	L	82	89	Right-handed alpha
Helix 88	AJ7	L	90	96	Right-handed alpha
Helix 89	AJ8	L	99	122	Right-handed alpha

There are 15 sheets in PDB entry 6W6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	450	first strand
Strand 2	B	543	550	anti-parallel
Strand 3	B	555	561	anti-parallel
Strand 4	B	398	405	anti-parallel
Strand 5	B	285	288	anti-parallel
Strand 6	B	578	580	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	338	first strand
Strand 2	B	354	361	anti-parallel
Strand 3	B	365	369	anti-parallel
Strand 4	B	296	300	anti-parallel
Strand 5	B	389	393	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	769	first strand
Strand 2	B	836	843	anti-parallel
Strand 3	B	820	829	anti-parallel
Strand 4	B	780	783	anti-parallel
Strand 5	B	854	858	anti-parallel
Strand 6	B	866	872	anti-parallel
Strand 7	B	762	769	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	223	first strand
Strand 2	D	208	212	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	182	188	anti-parallel
Strand 5	D	228	235	anti-parallel
Strand 6	D	242	248	anti-parallel
Strand 7	J	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	223	first strand
Strand 2	D	208	212	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	182	188	anti-parallel
Strand 5	D	228	235	anti-parallel
Strand 6	D	242	248	anti-parallel
Strand 7	J	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	77	first strand
Strand 2	E	84	88	anti-parallel
Strand 3	E	7	14	anti-parallel
Strand 4	E	113	120	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	10	11	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	79	84	parallel
Strand 3	F	130	142	anti-parallel
Strand 4	F	111	123	anti-parallel
Strand 5	F	156	158	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	17	first strand
Strand 2	G	90	103	anti-parallel
Strand 3	G	125	139	anti-parallel
Strand 4	G	62	68	anti-parallel
Strand 5	G	32	34	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	57	first strand
Strand 2	H	67	70	anti-parallel
Strand 3	H	9	14	anti-parallel
Strand 4	H	99	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	8	first strand
Strand 2	I	40	44	parallel
Strand 3	I	79	86	parallel
Strand 4	I	106	109	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	158	first strand
Strand 2	I	189	191	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	4	first strand
Strand 2	J	40	43	parallel
Strand 3	J	79	82	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	48	first strand
Strand 2	J	84	88	parallel
Strand 3	J	107	111	parallel
Strand 4	J	128	129	parallel
Strand 5	J	155	159	parallel
Strand 6	J	189	192	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W6V