Analysis of interatomic Contacts of Structural Units in PDB entry:
6W6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W6W entry

There are 4 chains in PDB entry 6W6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 143	GLU 1205
E	T 1	G 4
B	ALA 1	ASP 43
C	GLU 11	HIS 363

There are 38 helices in PDB entry 6W6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	268	273	Right-handed 310
Helix 2	AA2	A	449	459	Right-handed alpha
Helix 3	AA3	A	463	474	Right-handed alpha
Helix 4	AA4	A	487	492	Right-handed alpha
Helix 5	AA5	A	501	506	Right-handed alpha
Helix 6	AA6	A	507	512	Right-handed alpha
Helix 7	AA7	A	524	528	Right-handed 310
Helix 8	AA8	A	553	558	Right-handed alpha
Helix 9	AA9	A	568	573	Right-handed alpha
Helix 10	AB1	A	576	580	Right-handed 310
Helix 11	AB2	A	582	587	Right-handed alpha
Helix 12	AB3	A	644	648	Right-handed 310
Helix 13	AB4	A	671	675	Right-handed 310
Helix 14	AB5	A	803	811	Right-handed 310
Helix 15	AB6	A	842	846	Right-handed 310
Helix 16	AB7	A	883	887	Right-handed 310
Helix 17	AB8	A	951	955	Right-handed 310
Helix 18	AB9	A	1011	1016	Right-handed 310
Helix 19	AC1	A	1100	1108	Right-handed alpha
Helix 20	AC2	A	1140	1146	Right-handed alpha
Helix 21	AC3	C	13	17	Right-handed 310
Helix 22	AC4	C	20	25	Right-handed 310
Helix 23	AC5	C	30	35	Right-handed alpha
Helix 24	AC6	C	110	118	Right-handed alpha
Helix 25	AC7	C	160	177	Right-handed alpha
Helix 26	AC8	C	200	204	Right-handed 310
Helix 27	AC9	C	208	214	Right-handed alpha
Helix 28	AD1	C	214	219	Right-handed alpha
Helix 29	AD2	C	226	230	Right-handed alpha
Helix 30	AD3	C	232	237	Right-handed alpha
Helix 31	AD4	C	241	246	Right-handed 310
Helix 32	AD5	C	259	277	Right-handed alpha
Helix 33	AD6	C	300	305	Right-handed alpha
Helix 34	AD7	C	307	311	Right-handed 310
Helix 35	AD8	C	327	331	Right-handed 310
Helix 36	AD9	C	350	354	Right-handed 310
Helix 37	AE1	D	11	17	Right-handed alpha
Helix 38	AE2	D	101	118	Right-handed alpha

There are 21 sheets in PDB entry 6W6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	178	179	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	280	281	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	249	first strand
Strand 2	A	260	264	anti-parallel
Strand 3	A	299	300	parallel
Strand 4	A	287	288	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	539	540	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	406	409	anti-parallel
Strand 3	A	420	422	anti-parallel
Strand 4	A	380	381	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	367	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	429	433	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	658	667	anti-parallel
Strand 3	A	681	693	anti-parallel
Strand 4	A	629	637	parallel
Strand 5	A	640	641	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	658	667	anti-parallel
Strand 3	A	681	693	anti-parallel
Strand 4	A	629	637	parallel
Strand 5	A	621	624	anti-parallel
Strand 6	A	608	614	anti-parallel
Strand 7	A	650	654	anti-parallel
Strand 8	A	697	701	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	744	first strand
Strand 2	A	760	769	anti-parallel
Strand 3	A	728	738	anti-parallel
Strand 4	A	795	801	first strand
Strand 5	A	851	853	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	781	first strand
Strand 2	A	774	777	anti-parallel
Strand 3	A	728	738	anti-parallel
Strand 4	A	760	769	anti-parallel
Strand 5	A	816	822	first strand
Strand 6	A	859	862	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	994	first strand
Strand 2	A	966	976	anti-parallel
Strand 3	A	982	985	anti-parallel
Strand 4	A	945	950	parallel
Strand 5	A	929	935	anti-parallel
Strand 6	A	896	906	anti-parallel
Strand 7	A	966	976	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1024	1025	first strand
Strand 2	A	1154	1161	anti-parallel
Strand 3	A	1028	1038	anti-parallel
Strand 4	A	1118	1119	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1024	1025	first strand
Strand 2	A	1154	1161	anti-parallel
Strand 3	A	1195	1203	anti-parallel
Strand 4	A	1085	1088	parallel
Strand 5	A	1072	1078	anti-parallel
Strand 6	A	1028	1038	anti-parallel
Strand 7	A	1118	1119	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1041	1042	first strand
Strand 2	A	1068	1069	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1177	first strand
Strand 2	A	1188	1190	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1180	1181	first strand
Strand 2	A	1184	1185	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	47	49	anti-parallel
Strand 3	C	52	54	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	65	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	83	88	anti-parallel
Strand 4	C	145	155	parallel
Strand 5	C	131	140	anti-parallel
Strand 6	C	57	65	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	290	293	anti-parallel
Strand 3	C	280	281	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	72	79	anti-parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	52	58	parallel
Strand 5	D	41	47	anti-parallel
Strand 6	D	29	36	anti-parallel
Strand 7	D	72	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W6W