Analysis of interatomic Contacts of Structural Units in PDB entry:
6W78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W78 entry

There is 1 chain in PDB entry 6W78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 27ALA 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6W78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
90 96Right-handed 310
Helix 5
AA5
A
115 121Right-handed 310
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
163 169Right-handed 310
Helix 8
AA8
A
187 193Right-handed 310
Helix 9
AA9
A
211 217Right-handed 310
Helix 10
AB1
A
233 237Right-handed 310
Helix 11
AB2
A
256 260Right-handed 310
Helix 12
AB3
A
282 288Right-handed 310
Helix 13
AB4
A
309 313Right-handed 310
Helix 14
AB5
A
314 318Right-handed 310
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There are 5 sheets in PDB entry 6W78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
101 107parallel
Strand 4
A
126 132parallel
Strand 5
A
150 152parallel
Strand 6
A
174 176parallel
Strand 7
A
198 200parallel
Strand 8
A
221 223parallel
Strand 9
A
245 247parallel
Strand 10
A
269 271parallel
Strand 11
A
292 294parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
109 110parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
157 160parallel
Strand 3
A
181 182parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
252 253parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
323 325parallel
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