Analysis of interatomic Contacts of Structural Units in PDB entry:
6W80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W80 entry

There is 1 chain in PDB entry 6W80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -6LYS 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6W80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
18 21Right-handed 310
Helix 3
AA3
A
23 28Right-handed 310
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
70 82Right-handed alpha
Helix 6
AA6
A
91 105Right-handed alpha
Helix 7
AA7
A
116 133Right-handed alpha
Helix 8
AA8
A
148 151Right-handed 310
Helix 9
AA9
A
171 177Right-handed alpha
Helix 10
AB1
A
185 197Right-handed alpha
Helix 11
AB2
A
220 233Right-handed alpha
Helix 12
AB3
A
250 257Right-handed alpha
Helix 13
AB4
A
266 271Right-handed 310
Helix 14
AB5
A
281 286Right-handed alpha
Helix 15
AB6
A
303 318Right-handed alpha
Helix 16
AB7
A
321 345Right-handed alpha
Helix 17
AB8
A
368 374Right-handed alpha
Helix 18
AB9
A
376 390Right-handed alpha
Helix 19
AC1
A
409 428Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6W80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
392 393parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
276 280anti-parallel
Strand 3
A
262 265anti-parallel
Strand 4
A
235 239parallel
Strand 5
A
200 205parallel
Strand 6
A
136 141parallel
Strand 7
A
178 182parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 353first strand
Strand 2
A
356 360anti-parallel
Strand 3
A
402 403anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il