Analysis of interatomic Contacts of Structural Units in PDB entry:
6W89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W89 entry

There are 9 chains in PDB entry 6W89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 628	VAL 912
B	MET 178	THR 380
D	ALA 628	VAL 912
C	TRP 185	PHE 378
E	C 423	G 426
E	G 428	G 446
F	C 423	G 426
F	G 428	G 447
G	GLU 629	ASN 838

There are 91 helices in PDB entry 6W89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	644	653	Right-handed alpha
Helix 2	AA2	A	666	677	Right-handed alpha
Helix 3	AA3	A	686	690	Right-handed 310
Helix 4	AA4	A	691	699	Right-handed alpha
Helix 5	AA5	A	727	729	Right-handed 310
Helix 6	AA6	A	730	742	Right-handed alpha
Helix 7	AA7	A	762	774	Right-handed alpha
Helix 8	AA8	A	783	785	Right-handed 310
Helix 9	AA9	A	814	819	Right-handed 310
Helix 10	AB1	A	836	840	Right-handed 310
Helix 11	AB2	A	860	869	Right-handed alpha
Helix 12	AB3	A	881	892	Right-handed alpha
Helix 13	AB4	A	894	903	Right-handed alpha
Helix 14	AB5	A	904	908	Right-handed 310
Helix 15	AB6	B	183	187	Right-handed 310
Helix 16	AB7	B	199	206	Right-handed alpha
Helix 17	AB8	B	223	227	Right-handed 310
Helix 18	AB9	B	228	235	Right-handed alpha
Helix 19	AC1	B	255	271	Right-handed alpha
Helix 20	AC2	B	291	302	Right-handed alpha
Helix 21	AC3	B	328	333	Right-handed alpha
Helix 22	AC4	B	339	354	Right-handed alpha
Helix 23	AC5	B	360	366	Right-handed alpha
Helix 24	AC6	B	367	372	Right-handed 310
Helix 25	AC7	D	644	653	Right-handed alpha
Helix 26	AC8	D	666	677	Right-handed alpha
Helix 27	AC9	D	686	690	Right-handed 310
Helix 28	AD1	D	691	699	Right-handed alpha
Helix 29	AD2	D	727	729	Right-handed 310
Helix 30	AD3	D	730	742	Right-handed alpha
Helix 31	AD4	D	762	774	Right-handed alpha
Helix 32	AD5	D	783	785	Right-handed 310
Helix 33	AD6	D	814	819	Right-handed 310
Helix 34	AD7	D	836	840	Right-handed 310
Helix 35	AD8	D	860	869	Right-handed alpha
Helix 36	AD9	D	881	891	Right-handed alpha
Helix 37	AE1	D	894	903	Right-handed alpha
Helix 38	AE2	D	904	908	Right-handed 310
Helix 39	AE3	C	199	205	Right-handed alpha
Helix 40	AE4	C	228	235	Right-handed alpha
Helix 41	AE5	C	255	271	Right-handed alpha
Helix 42	AE6	C	291	303	Right-handed alpha
Helix 43	AE7	C	339	354	Right-handed alpha
Helix 44	AE8	C	362	369	Right-handed alpha
Helix 45	AE9	C	370	372	Right-handed 310
Helix 46	AF1	G	644	653	Right-handed alpha
Helix 47	AF2	G	666	677	Right-handed alpha
Helix 48	AF3	G	686	690	Right-handed 310
Helix 49	AF4	G	691	699	Right-handed alpha
Helix 50	AF5	G	727	729	Right-handed 310
Helix 51	AF6	G	730	742	Right-handed alpha
Helix 52	AF7	G	762	774	Right-handed alpha
Helix 53	AF8	G	783	785	Right-handed 310
Helix 54	AF9	G	814	819	Right-handed 310
Helix 55	AG1	G	836	840	Right-handed 310
Helix 56	AG2	G	860	869	Right-handed alpha
Helix 57	AG3	G	881	892	Right-handed alpha
Helix 58	AG4	G	894	903	Right-handed alpha
Helix 59	AG5	G	904	908	Right-handed 310
Helix 60	AG6	H	183	187	Right-handed 310
Helix 61	AG7	H	199	206	Right-handed alpha
Helix 62	AG8	H	223	227	Right-handed 310
Helix 63	AG9	H	228	235	Right-handed alpha
Helix 64	AH1	H	255	271	Right-handed alpha
Helix 65	AH2	H	291	302	Right-handed alpha
Helix 66	AH3	H	327	333	Right-handed alpha
Helix 67	AH4	H	339	353	Right-handed alpha
Helix 68	AH5	H	360	369	Right-handed alpha
Helix 69	AH6	H	370	375	Right-handed alpha
Helix 70	AH7	J	644	653	Right-handed alpha
Helix 71	AH8	J	666	677	Right-handed alpha
Helix 72	AH9	J	686	690	Right-handed 310
Helix 73	AI1	J	691	699	Right-handed alpha
Helix 74	AI2	J	727	729	Right-handed 310
Helix 75	AI3	J	730	742	Right-handed alpha
Helix 76	AI4	J	762	774	Right-handed alpha
Helix 77	AI5	J	783	785	Right-handed 310
Helix 78	AI6	J	814	819	Right-handed 310
Helix 79	AI7	J	836	840	Right-handed 310
Helix 80	AI8	J	860	869	Right-handed alpha
Helix 81	AI9	J	881	890	Right-handed alpha
Helix 82	AJ1	J	894	903	Right-handed alpha
Helix 83	AJ2	J	904	908	Right-handed 310
Helix 84	AJ3	I	199	207	Right-handed alpha
Helix 85	AJ4	I	228	234	Right-handed alpha
Helix 86	AJ5	I	255	271	Right-handed alpha
Helix 87	AJ6	I	291	302	Right-handed alpha
Helix 88	AJ7	I	327	333	Right-handed alpha
Helix 89	AJ8	I	339	353	Right-handed alpha
Helix 90	AJ9	I	360	369	Right-handed alpha
Helix 91	AK1	I	370	372	Right-handed 310

There are 12 sheets in PDB entry 6W89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	657	663	parallel
Strand 3	A	634	639	parallel
Strand 4	A	703	706	parallel
Strand 5	A	752	758	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	825	first strand
Strand 2	A	850	852	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	192	195	parallel
Strand 3	B	240	244	parallel
Strand 4	B	281	286	parallel
Strand 5	B	319	325	anti-parallel
Strand 6	B	307	311	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	657	663	parallel
Strand 3	D	634	639	parallel
Strand 4	D	703	706	parallel
Strand 5	D	752	758	parallel
Strand 6	D	791	796	anti-parallel
Strand 7	D	778	781	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	825	first strand
Strand 2	D	850	852	anti-parallel
Strand 3	D	855	857	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	192	195	parallel
Strand 3	C	240	244	parallel
Strand 4	C	281	286	parallel
Strand 5	C	321	324	anti-parallel
Strand 6	C	307	309	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	682	683	first strand
Strand 2	G	657	663	parallel
Strand 3	G	634	639	parallel
Strand 4	G	703	706	parallel
Strand 5	G	752	758	parallel
Strand 6	G	791	796	anti-parallel
Strand 7	G	778	781	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	824	825	first strand
Strand 2	G	850	852	anti-parallel
Strand 3	G	855	857	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	221	first strand
Strand 2	H	192	195	parallel
Strand 3	H	240	244	parallel
Strand 4	H	281	286	parallel
Strand 5	H	320	325	anti-parallel
Strand 6	H	307	310	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	681	683	first strand
Strand 2	J	657	663	parallel
Strand 3	J	634	639	parallel
Strand 4	J	703	706	parallel
Strand 5	J	752	758	parallel
Strand 6	J	791	796	anti-parallel
Strand 7	J	778	781	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	823	825	first strand
Strand 2	J	850	852	anti-parallel
Strand 3	J	855	857	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	219	220	first strand
Strand 2	I	192	195	parallel
Strand 3	I	240	244	parallel
Strand 4	I	281	286	parallel
Strand 5	I	319	324	anti-parallel
Strand 6	I	307	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W89

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W89