Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W8B entry

There are 9 chains in PDB entry 6W8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 628	VAL 912
B	MET 178	THR 380
C	TRP 185	SER 379
D	ALA 628	VAL 912
E	C 423	G 426
E	G 428	G 447
F	C 423	G 426
F	G 428	G 447
H	ALA 628	ARG 836

There are 89 helices in PDB entry 6W8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	644	653	Right-handed alpha
Helix 2	AA2	A	666	677	Right-handed alpha
Helix 3	AA3	A	686	690	Right-handed 310
Helix 4	AA4	A	691	699	Right-handed alpha
Helix 5	AA5	A	729	742	Right-handed alpha
Helix 6	AA6	A	762	774	Right-handed alpha
Helix 7	AA7	A	783	785	Right-handed 310
Helix 8	AA8	A	814	819	Right-handed alpha
Helix 9	AA9	A	836	840	Right-handed 310
Helix 10	AB1	A	860	869	Right-handed alpha
Helix 11	AB2	A	881	891	Right-handed alpha
Helix 12	AB3	A	894	903	Right-handed alpha
Helix 13	AB4	A	904	908	Right-handed 310
Helix 14	AB5	B	183	187	Right-handed 310
Helix 15	AB6	B	199	205	Right-handed alpha
Helix 16	AB7	B	223	227	Right-handed 310
Helix 17	AB8	B	228	235	Right-handed alpha
Helix 18	AB9	B	255	270	Right-handed alpha
Helix 19	AC1	B	291	302	Right-handed alpha
Helix 20	AC2	B	328	333	Right-handed alpha
Helix 21	AC3	B	339	354	Right-handed alpha
Helix 22	AC4	B	360	367	Right-handed alpha
Helix 23	AC5	B	368	372	Right-handed 310
Helix 24	AC6	C	199	205	Right-handed alpha
Helix 25	AC7	C	223	227	Right-handed 310
Helix 26	AC8	C	228	235	Right-handed alpha
Helix 27	AC9	C	255	271	Right-handed alpha
Helix 28	AD1	C	291	303	Right-handed alpha
Helix 29	AD2	C	339	354	Right-handed alpha
Helix 30	AD3	C	360	365	Right-handed alpha
Helix 31	AD4	C	368	372	Right-handed 310
Helix 32	AD5	D	644	653	Right-handed alpha
Helix 33	AD6	D	666	677	Right-handed alpha
Helix 34	AD7	D	686	690	Right-handed 310
Helix 35	AD8	D	691	699	Right-handed alpha
Helix 36	AD9	D	729	742	Right-handed alpha
Helix 37	AE1	D	762	774	Right-handed alpha
Helix 38	AE2	D	783	785	Right-handed 310
Helix 39	AE3	D	814	819	Right-handed 310
Helix 40	AE4	D	836	840	Right-handed 310
Helix 41	AE5	D	860	869	Right-handed alpha
Helix 42	AE6	D	881	892	Right-handed alpha
Helix 43	AE7	D	894	903	Right-handed alpha
Helix 44	AE8	D	904	908	Right-handed 310
Helix 45	AE9	H	644	653	Right-handed alpha
Helix 46	AF1	H	666	677	Right-handed alpha
Helix 47	AF2	H	686	690	Right-handed 310
Helix 48	AF3	H	691	699	Right-handed alpha
Helix 49	AF4	H	729	742	Right-handed alpha
Helix 50	AF5	H	762	774	Right-handed alpha
Helix 51	AF6	H	783	785	Right-handed 310
Helix 52	AF7	H	814	819	Right-handed alpha
Helix 53	AF8	H	836	840	Right-handed 310
Helix 54	AF9	H	860	869	Right-handed alpha
Helix 55	AG1	H	881	891	Right-handed alpha
Helix 56	AG2	H	894	903	Right-handed alpha
Helix 57	AG3	H	904	908	Right-handed 310
Helix 58	AG4	I	183	187	Right-handed 310
Helix 59	AG5	I	199	206	Right-handed alpha
Helix 60	AG6	I	223	227	Right-handed 310
Helix 61	AG7	I	228	235	Right-handed alpha
Helix 62	AG8	I	255	271	Right-handed alpha
Helix 63	AG9	I	291	302	Right-handed alpha
Helix 64	AH1	I	327	333	Right-handed alpha
Helix 65	AH2	I	339	349	Right-handed alpha
Helix 66	AH3	I	360	367	Right-handed alpha
Helix 67	AH4	I	368	374	Right-handed 310
Helix 68	AH5	J	199	207	Right-handed alpha
Helix 69	AH6	J	223	227	Right-handed 310
Helix 70	AH7	J	228	235	Right-handed alpha
Helix 71	AH8	J	255	271	Right-handed alpha
Helix 72	AH9	J	291	303	Right-handed alpha
Helix 73	AI1	J	339	352	Right-handed alpha
Helix 74	AI2	J	360	365	Right-handed alpha
Helix 75	AI3	J	366	367	Right-handed 310
Helix 76	AI4	J	368	374	Right-handed 310
Helix 77	AI5	K	644	653	Right-handed alpha
Helix 78	AI6	K	666	677	Right-handed alpha
Helix 79	AI7	K	686	690	Right-handed 310
Helix 80	AI8	K	691	699	Right-handed alpha
Helix 81	AI9	K	729	742	Right-handed alpha
Helix 82	AJ1	K	762	774	Right-handed alpha
Helix 83	AJ2	K	783	785	Right-handed 310
Helix 84	AJ3	K	814	819	Right-handed 310
Helix 85	AJ4	K	836	840	Right-handed 310
Helix 86	AJ5	K	860	869	Right-handed alpha
Helix 87	AJ6	K	881	892	Right-handed alpha
Helix 88	AJ7	K	894	903	Right-handed alpha
Helix 89	AJ8	K	904	908	Right-handed 310

There are 12 sheets in PDB entry 6W8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	657	663	parallel
Strand 3	A	634	639	parallel
Strand 4	A	703	706	parallel
Strand 5	A	752	758	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	825	first strand
Strand 2	A	850	852	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	192	195	parallel
Strand 3	B	240	244	parallel
Strand 4	B	281	286	parallel
Strand 5	B	320	325	anti-parallel
Strand 6	B	307	310	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	192	195	parallel
Strand 3	C	240	244	parallel
Strand 4	C	281	286	parallel
Strand 5	C	321	324	anti-parallel
Strand 6	C	307	309	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	657	663	parallel
Strand 3	D	634	639	parallel
Strand 4	D	703	706	parallel
Strand 5	D	752	758	parallel
Strand 6	D	791	796	anti-parallel
Strand 7	D	778	781	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	825	first strand
Strand 2	D	850	852	anti-parallel
Strand 3	D	855	857	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	682	683	first strand
Strand 2	H	657	663	parallel
Strand 3	H	634	639	parallel
Strand 4	H	703	706	parallel
Strand 5	H	752	758	parallel
Strand 6	H	791	796	anti-parallel
Strand 7	H	778	781	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	823	825	first strand
Strand 2	H	850	852	anti-parallel
Strand 3	H	855	857	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	218	221	first strand
Strand 2	I	192	195	parallel
Strand 3	I	240	244	parallel
Strand 4	I	281	286	parallel
Strand 5	I	320	325	anti-parallel
Strand 6	I	307	310	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	219	220	first strand
Strand 2	J	192	195	parallel
Strand 3	J	240	244	parallel
Strand 4	J	281	286	parallel
Strand 5	J	321	324	anti-parallel
Strand 6	J	307	309	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	682	683	first strand
Strand 2	K	657	663	parallel
Strand 3	K	634	639	parallel
Strand 4	K	703	706	parallel
Strand 5	K	752	758	parallel
Strand 6	K	791	796	anti-parallel
Strand 7	K	778	781	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	823	825	first strand
Strand 2	K	850	852	anti-parallel
Strand 3	K	855	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8B