Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W8D entry

There are 8 chains in PDB entry 6W8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 629	VAL 912
B	PHE 179	SER 379
D	ALA 628	VAL 912
C	ARG 187	PHE 378
E	G 422	G 426
E	G 428	G 446
F	G 422	G 426
F	G 428	G 446

There are 42 helices in PDB entry 6W8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	644	653	Right-handed alpha
Helix 2	AA2	A	666	677	Right-handed alpha
Helix 3	AA3	A	686	690	Right-handed 310
Helix 4	AA4	A	691	699	Right-handed alpha
Helix 5	AA5	A	729	742	Right-handed alpha
Helix 6	AA6	A	762	774	Right-handed alpha
Helix 7	AA7	A	783	785	Right-handed 310
Helix 8	AA8	A	814	819	Right-handed 310
Helix 9	AA9	A	836	840	Right-handed 310
Helix 10	AB1	A	860	869	Right-handed alpha
Helix 11	AB2	A	881	891	Right-handed alpha
Helix 12	AB3	A	894	903	Right-handed alpha
Helix 13	AB4	A	904	908	Right-handed 310
Helix 14	AB5	B	199	205	Right-handed alpha
Helix 15	AB6	B	228	234	Right-handed alpha
Helix 16	AB7	B	255	271	Right-handed alpha
Helix 17	AB8	B	291	303	Right-handed alpha
Helix 18	AB9	B	327	333	Right-handed alpha
Helix 19	AC1	B	339	353	Right-handed alpha
Helix 20	AC2	B	361	375	Right-handed 310
Helix 21	AC3	D	644	653	Right-handed alpha
Helix 22	AC4	D	666	677	Right-handed alpha
Helix 23	AC5	D	686	690	Right-handed 310
Helix 24	AC6	D	691	699	Right-handed alpha
Helix 25	AC7	D	729	742	Right-handed alpha
Helix 26	AC8	D	762	774	Right-handed alpha
Helix 27	AC9	D	783	785	Right-handed 310
Helix 28	AD1	D	814	819	Right-handed 310
Helix 29	AD2	D	836	840	Right-handed 310
Helix 30	AD3	D	860	869	Right-handed alpha
Helix 31	AD4	D	881	892	Right-handed alpha
Helix 32	AD5	D	894	903	Right-handed alpha
Helix 33	AD6	D	904	908	Right-handed 310
Helix 34	AD7	C	199	207	Right-handed alpha
Helix 35	AD8	C	223	227	Right-handed 310
Helix 36	AD9	C	228	235	Right-handed alpha
Helix 37	AE1	C	255	271	Right-handed alpha
Helix 38	AE2	C	291	303	Right-handed alpha
Helix 39	AE3	C	327	333	Right-handed alpha
Helix 40	AE4	C	340	352	Right-handed alpha
Helix 41	AE5	C	360	368	Right-handed alpha
Helix 42	AE6	C	369	372	Right-handed 310

There are 6 sheets in PDB entry 6W8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	657	663	parallel
Strand 3	A	634	639	parallel
Strand 4	A	703	706	parallel
Strand 5	A	752	758	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	825	first strand
Strand 2	A	850	852	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	192	195	parallel
Strand 3	B	240	244	parallel
Strand 4	B	281	286	parallel
Strand 5	B	320	325	anti-parallel
Strand 6	B	307	310	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	657	663	parallel
Strand 3	D	634	639	parallel
Strand 4	D	703	706	parallel
Strand 5	D	752	758	parallel
Strand 6	D	791	796	anti-parallel
Strand 7	D	778	781	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	825	first strand
Strand 2	D	850	852	anti-parallel
Strand 3	D	855	857	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	192	195	parallel
Strand 3	C	240	244	parallel
Strand 4	C	281	286	parallel
Strand 5	C	320	325	anti-parallel
Strand 6	C	307	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8D