Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W8I entry

There are 6 chains in PDB entry 6W8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 393GLU 657
B
 TRP 395GLU 657
C
 TRP 395GLU 657
D
 SER 260ARG 351
E
 SER 260TYR 352
F
 SER 260TYR 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6W8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
440 451Right-handed alpha
Helix 2
AA2
A
482 488Right-handed alpha
Helix 3
AA3
A
494 515Right-handed alpha
Helix 4
AA4
A
523 525Right-handed 310
Helix 5
AA5
A
541 545Right-handed 310
Helix 6
AA6
A
565 571Right-handed alpha
Helix 7
AA7
A
575 592Right-handed alpha
Helix 8
AA8
A
602 612Right-handed alpha
Helix 9
AA9
A
623 633Right-handed alpha
Helix 10
AB1
A
637 641Right-handed 310
Helix 11
AB2
A
643 656Right-handed alpha
Helix 12
AB3
B
441 452Right-handed alpha
Helix 13
AB4
B
481 488Right-handed alpha
Helix 14
AB5
B
489 492Right-handed 310
Helix 15
AB6
B
494 515Right-handed alpha
Helix 16
AB7
B
565 571Right-handed alpha
Helix 17
AB8
B
575 592Right-handed alpha
Helix 18
AB9
B
602 613Right-handed alpha
Helix 19
AC1
B
623 633Right-handed alpha
Helix 20
AC2
B
637 641Right-handed 310
Helix 21
AC3
B
643 655Right-handed alpha
Helix 22
AC4
C
398 400Right-handed 310
Helix 23
AC5
C
438 452Right-handed alpha
Helix 24
AC6
C
482 488Right-handed alpha
Helix 25
AC7
C
494 515Right-handed alpha
Helix 26
AC8
C
548 553Right-handed alpha
Helix 27
AC9
C
565 571Right-handed alpha
Helix 28
AD1
C
577 592Right-handed alpha
Helix 29
AD2
C
602 613Right-handed alpha
Helix 30
AD3
C
623 634Right-handed alpha
Helix 31
AD4
C
637 641Right-handed 310
Helix 32
AD5
C
643 657Right-handed alpha
Helix 33
AD6
D
263 267Right-handed 310
Helix 34
AD7
D
268 274Right-handed alpha
Helix 35
AD8
D
275 278Right-handed 310
Helix 36
AD9
D
286 293Right-handed alpha
Helix 37
AE1
D
321 330Right-handed alpha
Helix 38
AE2
D
333 340Right-handed alpha
Helix 39
AE3
D
341 350Right-handed alpha
Helix 40
AE4
E
263 267Right-handed 310
Helix 41
AE5
E
268 274Right-handed alpha
Helix 42
AE6
E
275 279Right-handed 310
Helix 43
AE7
E
286 293Right-handed alpha
Helix 44
AE8
E
321 330Right-handed alpha
Helix 45
AE9
E
333 341Right-handed alpha
Helix 46
AF1
E
341 350Right-handed alpha
Helix 47
AF2
F
263 267Right-handed 310
Helix 48
AF3
F
268 276Right-handed alpha
Helix 49
AF4
F
286 293Right-handed alpha
Helix 50
AF5
F
321 330Right-handed alpha
Helix 51
AF6
F
333 340Right-handed alpha
Helix 52
AF7
F
341 350Right-handed alpha
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There are 9 sheets in PDB entry 6W8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 410first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 432anti-parallel
Strand 4
A
470 475anti-parallel
Strand 5
A
460 464anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
535 537anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 410first strand
Strand 2
B
415 421anti-parallel
Strand 3
B
425 432anti-parallel
Strand 4
B
470 475anti-parallel
Strand 5
B
460 462anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 529first strand
Strand 2
B
535 537anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 410first strand
Strand 2
C
414 421anti-parallel
Strand 3
C
425 432anti-parallel
Strand 4
C
470 475anti-parallel
Strand 5
C
460 464anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
480 481first strand
Strand 2
C
527 529anti-parallel
Strand 3
C
535 537anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
295 297first strand
Strand 2
D
304 306anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
295 297first strand
Strand 2
E
304 306anti-parallel
Strand 3
E
312 313anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
295 296first strand
Strand 2
F
304 306anti-parallel
Strand 3
F
312 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il