Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W8J entry

There are 8 chains in PDB entry 6W8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 629VAL 912
B
 MET 178THR 380
C
 TRP 185PHE 378
D
 ALA 628VAL 912
E
 C 423 G 426
E
 A 428 G 447
F
 C 423 G 426
F
 A 428 G 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 6W8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
644 654Right-handed alpha
Helix 2
AA2
A
666 677Right-handed alpha
Helix 3
AA3
A
686 690Right-handed 310
Helix 4
AA4
A
691 699Right-handed alpha
Helix 5
AA5
A
729 742Right-handed alpha
Helix 6
AA6
A
762 774Right-handed alpha
Helix 7
AA7
A
783 785Right-handed 310
Helix 8
AA8
A
814 819Right-handed 310
Helix 9
AA9
A
836 841Right-handed 310
Helix 10
AB1
A
860 869Right-handed alpha
Helix 11
AB2
A
881 890Right-handed alpha
Helix 12
AB3
A
894 903Right-handed alpha
Helix 13
AB4
A
904 908Right-handed 310
Helix 14
AB5
B
183 187Right-handed 310
Helix 15
AB6
B
199 204Right-handed alpha
Helix 16
AB7
B
228 235Right-handed alpha
Helix 17
AB8
B
255 271Right-handed alpha
Helix 18
AB9
B
291 303Right-handed alpha
Helix 19
AC1
B
327 333Right-handed alpha
Helix 20
AC2
B
339 354Right-handed alpha
Helix 21
AC3
B
368 375Right-handed 310
Helix 22
AC4
C
199 204Right-handed alpha
Helix 23
AC5
C
228 235Right-handed alpha
Helix 24
AC6
C
255 271Right-handed alpha
Helix 25
AC7
C
291 302Right-handed alpha
Helix 26
AC8
C
327 332Right-handed alpha
Helix 27
AC9
C
339 353Right-handed alpha
Helix 28
AD1
C
364 369Right-handed alpha
Helix 29
AD2
C
370 372Right-handed 310
Helix 30
AD3
D
644 653Right-handed alpha
Helix 31
AD4
D
666 677Right-handed alpha
Helix 32
AD5
D
686 690Right-handed 310
Helix 33
AD6
D
691 699Right-handed alpha
Helix 34
AD7
D
725 728Right-handed 310
Helix 35
AD8
D
729 742Right-handed alpha
Helix 36
AD9
D
762 774Right-handed alpha
Helix 37
AE1
D
783 785Right-handed 310
Helix 38
AE2
D
814 819Right-handed 310
Helix 39
AE3
D
836 840Right-handed 310
Helix 40
AE4
D
860 869Right-handed alpha
Helix 41
AE5
D
881 890Right-handed alpha
Helix 42
AE6
D
894 903Right-handed alpha
Helix 43
AE7
D
904 908Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6W8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 683first strand
Strand 2
A
657 663parallel
Strand 3
A
634 639parallel
Strand 4
A
703 706parallel
Strand 5
A
752 758parallel
Strand 6
A
791 796anti-parallel
Strand 7
A
778 781anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 825first strand
Strand 2
A
850 852anti-parallel
Strand 3
A
855 857anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
B
192 195parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
320 325anti-parallel
Strand 6
B
307 310anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 220first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 286parallel
Strand 5
C
320 324anti-parallel
Strand 6
C
307 310anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
682 683first strand
Strand 2
D
657 663parallel
Strand 3
D
634 639parallel
Strand 4
D
703 706parallel
Strand 5
D
752 758parallel
Strand 6
D
791 796anti-parallel
Strand 7
D
778 781anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
824 825first strand
Strand 2
D
850 852anti-parallel
Strand 3
D
855 857anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il