Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W8S entry

There are 4 chains in PDB entry 6W8S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLU 420
B	THR 2	GLU 420
C	THR 2	GLU 420
D	THR 2	LEU 303

There are 54 helices in PDB entry 6W8S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	36	Right-handed alpha
Helix 2	AA2	A	40	42	Right-handed 310
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	116	124	Right-handed alpha
Helix 5	AA5	A	228	240	Right-handed alpha
Helix 6	AA6	A	249	258	Right-handed alpha
Helix 7	AA7	A	263	278	Right-handed alpha
Helix 8	AA8	A	283	302	Right-handed alpha
Helix 9	AA9	A	305	314	Right-handed alpha
Helix 10	AB1	A	319	324	Right-handed 310
Helix 11	AB2	A	358	362	Right-handed 310
Helix 12	AB3	A	365	377	Right-handed alpha
Helix 13	AB4	A	382	398	Right-handed alpha
Helix 14	AB5	B	21	36	Right-handed alpha
Helix 15	AB6	B	40	42	Right-handed 310
Helix 16	AB7	B	58	72	Right-handed alpha
Helix 17	AB8	B	116	124	Right-handed alpha
Helix 18	AB9	B	228	240	Right-handed alpha
Helix 19	AC1	B	249	258	Right-handed alpha
Helix 20	AC2	B	263	278	Right-handed alpha
Helix 21	AC3	B	283	292	Right-handed alpha
Helix 22	AC4	B	294	302	Right-handed alpha
Helix 23	AC5	B	305	314	Right-handed alpha
Helix 24	AC6	B	319	324	Right-handed 310
Helix 25	AC7	B	358	362	Right-handed 310
Helix 26	AC8	B	365	377	Right-handed alpha
Helix 27	AC9	B	382	397	Right-handed alpha
Helix 28	AD1	C	21	36	Right-handed alpha
Helix 29	AD2	C	40	42	Right-handed 310
Helix 30	AD3	C	58	72	Right-handed alpha
Helix 31	AD4	C	116	124	Right-handed alpha
Helix 32	AD5	C	228	240	Right-handed alpha
Helix 33	AD6	C	249	258	Right-handed alpha
Helix 34	AD7	C	263	278	Right-handed alpha
Helix 35	AD8	C	283	292	Right-handed alpha
Helix 36	AD9	C	292	302	Right-handed alpha
Helix 37	AE1	C	305	314	Right-handed alpha
Helix 38	AE2	C	319	324	Right-handed 310
Helix 39	AE3	C	358	362	Right-handed 310
Helix 40	AE4	C	365	377	Right-handed alpha
Helix 41	AE5	C	382	398	Right-handed alpha
Helix 42	AE6	D	21	36	Right-handed alpha
Helix 43	AE7	D	40	42	Right-handed 310
Helix 44	AE8	D	58	72	Right-handed alpha
Helix 45	AE9	D	116	124	Right-handed alpha
Helix 46	AF1	D	228	240	Right-handed alpha
Helix 47	AF2	D	249	258	Right-handed alpha
Helix 48	AF3	D	263	278	Right-handed alpha
Helix 49	AF4	D	283	292	Right-handed alpha
Helix 50	AF5	D	292	302	Right-handed alpha
Helix 51	AF6	D	305	314	Right-handed alpha
Helix 52	AF7	D	319	328	Right-handed 310
Helix 53	AF8	D	365	376	Right-handed alpha
Helix 54	AF9	D	382	397	Right-handed alpha

There are 13 sheets in PDB entry 6W8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	3	9	parallel
Strand 3	A	78	84	parallel
Strand 4	A	132	137	parallel
Strand 5	A	339	342	parallel
Strand 6	A	405	406	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	91	first strand
Strand 2	A	102	107	anti-parallel
Strand 3	A	114	115	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	219	220	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	351	353	anti-parallel
Strand 3	A	363	364	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	3	9	parallel
Strand 3	B	78	84	parallel
Strand 4	B	132	137	parallel
Strand 5	B	339	342	parallel
Strand 6	B	405	406	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	91	first strand
Strand 2	B	102	107	anti-parallel
Strand 3	B	114	115	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	219	224	anti-parallel
Strand 3	B	351	354	anti-parallel
Strand 4	B	363	364	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	3	9	parallel
Strand 3	C	78	84	parallel
Strand 4	C	132	137	parallel
Strand 5	C	339	342	parallel
Strand 6	C	405	406	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	91	first strand
Strand 2	C	102	107	anti-parallel
Strand 3	C	114	115	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	218	224	anti-parallel
Strand 3	C	351	354	anti-parallel
Strand 4	C	363	364	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	3	9	parallel
Strand 3	D	78	84	parallel
Strand 4	D	132	137	parallel
Strand 5	D	338	342	parallel
Strand 6	D	405	407	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	91	first strand
Strand 2	D	102	107	anti-parallel
Strand 3	D	114	115	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	214	first strand
Strand 2	D	219	224	anti-parallel
Strand 3	D	351	354	anti-parallel
Strand 4	D	363	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W8S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8S